net.sf.okapi.steps.gcaligner

Interface DpFunction<T>

All Known Implementing Classes:

AlignmentFunction

public interface DpFunction<T>

DpFunction is an interface defining a method to calculate the score of a matrix cell. The implementation of this interface should have the knowledge of the type of the sequences to be aligned.

Method Summary

Modifier and Type	Method and Description
void	setCellScore(int xPos, int yPos, DpMatrix<T> matrix) Set the score to DpMatrixCell at the specified location of the matrix.

Method Detail

setCellScore

void setCellScore(int xPos,
                  int yPos,
                  DpMatrix<T> matrix)

Set the score to DpMatrixCell at the specified location of the matrix.

Parameters:

xPos - X index of the matrix.

yPos - Y index of the matrix.

matrix - matrix