A B C E F N R U

A

atomBasedDBStereo(Graph) - Static method in class uk.ac.ebi.beam.Functions

Convert any directional bond based stereo configuration to atom-based specification.

B

bondBasedDBStereo(Graph) - Static method in class uk.ac.ebi.beam.Functions

Convert a graph with atom-based double-bond stereo configuration to bond-based specification (direction UP and DOWN bonds).

C

canonicalize(Graph, long[]) - Static method in class uk.ac.ebi.beam.Functions

Apply the labeling labels[] to the graph g.

collapse(Graph) - Static method in class uk.ac.ebi.beam.Functions

Collapse a graph with specified atom properties to one with organic subset atoms.

E

expand(Graph) - Static method in class uk.ac.ebi.beam.Functions

Expand a graph with organic subsets to one with specified atom properties.

F

Functions - Class in uk.ac.ebi.beam

Collection of utilities for transforming chemical graphs.

N

normaliseDirectionalLabels(Graph) - Static method in class uk.ac.ebi.beam.Functions

R

randomise(Graph) - Static method in class uk.ac.ebi.beam.Functions

Randomise the atom order of the provided chemical graph.

reverse(Graph) - Static method in class uk.ac.ebi.beam.Functions

Reverse the atom order of the provided chemical graph.

U

uk.ac.ebi.beam - package uk.ac.ebi.beam

A B C E F N R U