Serialized Form (cdk-standard 2.1.1 API)

Package org.openscience.cdk.fingerprint
- Class org.openscience.cdk.fingerprint.BitSetFingerprint extends Object implements Serializable
  
  serialVersionUID:
  
  9034774011095165227L
  - Serialized Fields
    - bitset
```
BitSet bitset
```
- Class org.openscience.cdk.fingerprint.IntArrayCountFingerprint extends Object implements Serializable
  
  serialVersionUID:
  
  8656072054328822795L
  - Serialized Fields
    - hitHashes
```
int[] hitHashes
```
    - numOfHits
```
int[] numOfHits
```
    - behaveAsBitFingerprint
```
boolean behaveAsBitFingerprint
```
- Class org.openscience.cdk.fingerprint.IntArrayFingerprint extends Object implements Serializable
  
  serialVersionUID:
  
  5175105019921245323L
  - Serialized Fields
    - trueBits
```
int[] trueBits
```
Package org.openscience.cdk.isomorphism
- Class org.openscience.cdk.isomorphism.IsomorphismTester extends Object implements Serializable
  
  serialVersionUID:
  
  2499779110996693974L
  - Serialized Fields
    - baseTable
```
long[] baseTable
```
    - sortedBaseTable
```
long[] sortedBaseTable
```
    - compareTable
```
long[] compareTable
```
    - sortedCompareTable
```
long[] sortedCompareTable
```
    - base
```
IAtomContainer base
```
    - compare
```
IAtomContainer compare
```
Package org.openscience.cdk.math
- Class org.openscience.cdk.math.RandomNumbersTool extends Random implements Serializable
  
  serialVersionUID:
  
  -8238833473383641882L
Package org.openscience.cdk.qsar
- Class org.openscience.cdk.qsar.DescriptorSpecification extends Object implements Serializable
  
  serialVersionUID:
  
  7044545275802343828L
  - Serialized Fields
    - specificationReference
```
String specificationReference
```
    - implementationTitle
```
String implementationTitle
```
    - implementationIdentifier
```
String implementationIdentifier
```
    - implementationVendor
```
String implementationVendor
```
- Class org.openscience.cdk.qsar.DescriptorValue extends Object implements Serializable
  
  serialVersionUID:
  
  -5672896059814842972L
  - Serialized Fields
    - specification
```
DescriptorSpecification specification
```
    - parameterNames
```
String[] parameterNames
```
    - parameterSettings
```
Object[] parameterSettings
```
    - value
```
IDescriptorResult value
```
    - descriptorNames
```
String[] descriptorNames
```
    - exception
```
Exception exception
```
Package org.openscience.cdk.qsar.result
- Class org.openscience.cdk.qsar.result.BooleanResult extends BooleanResultType implements Serializable
  
  serialVersionUID:
  
  3746767816253035856L
  - Serialized Fields
    - value
```
boolean value
```
- Class org.openscience.cdk.qsar.result.BooleanResultType extends Object implements Serializable
  
  serialVersionUID:
  
  143647705094158395L
- Class org.openscience.cdk.qsar.result.DoubleArrayResult extends DoubleArrayResultType implements Serializable
  
  serialVersionUID:
  
  2345607580017306612L
  - Serialized Fields
    - array
```
List<E> array
```
- Class org.openscience.cdk.qsar.result.DoubleArrayResultType extends Object implements Serializable
  
  serialVersionUID:
  
  -8255004284721233969L
  - Serialized Fields
    - size
```
int size
```
- Class org.openscience.cdk.qsar.result.DoubleResult extends Object implements Serializable
  
  serialVersionUID:
  
  7711619468523616757L
  - Serialized Fields
    - value
```
double value
```
- Class org.openscience.cdk.qsar.result.DoubleResultType extends Object implements Serializable
  
  serialVersionUID:
  
  -6641147506132424322L
- Class org.openscience.cdk.qsar.result.IntegerArrayResult extends IntegerArrayResultType implements Serializable
  
  serialVersionUID:
  
  4077762427385735922L
  - Serialized Fields
    - array
```
List<E> array
```
- Class org.openscience.cdk.qsar.result.IntegerArrayResultType extends Object implements Serializable
  
  serialVersionUID:
  
  1492674654677531635L
  - Serialized Fields
    - size
```
int size
```
- Class org.openscience.cdk.qsar.result.IntegerResult extends Object implements Serializable
  
  serialVersionUID:
  
  -8066984646119839996L
  - Serialized Fields
    - value
```
int value
```
- Class org.openscience.cdk.qsar.result.IntegerResultType extends Object implements Serializable
  
  serialVersionUID:
  
  -6643953534920216664L
Package org.openscience.cdk.smiles
- Class org.openscience.cdk.smiles.InvPair extends Object implements Serializable
  
  serialVersionUID:
  
  -1397634098919863122L
  - Serialized Fields
    - last
```
long last
```
    - curr
```
long curr
```
    - atom
```
IAtom atom
```
    - prime
```
int prime
```
Package org.openscience.cdk.tools
- Class org.openscience.cdk.tools.HOSECodeGenerator extends Object implements Serializable
  
  serialVersionUID:
  
  -4353471818831864513L
  - Serialized Fields
    - sphereNodes
```
List<E> sphereNodes
```
      Container for the nodes in a sphere.
    - sphereNodesWithAtoms
```
List<E> sphereNodesWithAtoms
```
    - nextSphereNodes
```
List<E> nextSphereNodes
```
      Container for the node in the next sphere Assembled in a recursive method and then passed to the next recursion to become "sphereNodes".
    - sphere
```
int sphere
```
      Counter for the sphere in which we currently work.
    - maxSphere
```
int maxSphere
```
      How many spheres are we supposed inspect.
    - spheres
```
List<E>[] spheres
```
      Here we store the spheres that we assemble, in order to parse them into a code later.
    - spheresWithAtoms
```
List<E>[] spheresWithAtoms
```
    - HOSECode
```
StringBuffer HOSECode
```
      The HOSECode string that we assemble
    - atomContainer
```
IAtomContainer atomContainer
```
      The molecular structure on which we work
    - sphereDelimiters
```
String[] sphereDelimiters
```
      Delimiters used to separate spheres in the output string. Bremser uses the sequence"(//)" for the first four spheres.
    - bondSymbols
```
String[] bondSymbols
```
      The bond symbols used for bond orders "single", "double", "triple" and "aromatic"
    - centerCode
```
String centerCode
```
    - rootNode
```
org.openscience.cdk.tools.HOSECodeGenerator.TreeNode rootNode
```
    - debug
```
boolean debug
```
    - acold
```
IAtomContainer acold
```
    - soar
```
IRingSet soar
```
    - isotopeFac
```
IsotopeFactory isotopeFac
```

Serialized Form

Package org.openscience.cdk.fingerprint

Class org.openscience.cdk.fingerprint.BitSetFingerprint extends Object implements Serializable

Serialized Fields

bitset

Class org.openscience.cdk.fingerprint.IntArrayCountFingerprint extends Object implements Serializable

Serialized Fields

hitHashes

numOfHits

behaveAsBitFingerprint

Class org.openscience.cdk.fingerprint.IntArrayFingerprint extends Object implements Serializable

Serialized Fields

trueBits

Package org.openscience.cdk.isomorphism

Class org.openscience.cdk.isomorphism.IsomorphismTester extends Object implements Serializable

Serialized Fields

baseTable

sortedBaseTable

compareTable

sortedCompareTable

base

compare

Package org.openscience.cdk.math

Class org.openscience.cdk.math.RandomNumbersTool extends Random implements Serializable

Package org.openscience.cdk.qsar

Class org.openscience.cdk.qsar.DescriptorSpecification extends Object implements Serializable

Serialized Fields

specificationReference

implementationTitle

implementationIdentifier

implementationVendor

Class org.openscience.cdk.qsar.DescriptorValue extends Object implements Serializable

Serialized Fields

specification

parameterNames

parameterSettings

value

descriptorNames

exception

Package org.openscience.cdk.qsar.result

Class org.openscience.cdk.qsar.result.BooleanResult extends BooleanResultType implements Serializable

Serialized Fields

value

Class org.openscience.cdk.qsar.result.BooleanResultType extends Object implements Serializable

Class org.openscience.cdk.qsar.result.DoubleArrayResult extends DoubleArrayResultType implements Serializable

Serialized Fields

array

Class org.openscience.cdk.qsar.result.DoubleArrayResultType extends Object implements Serializable

Serialized Fields

size

Class org.openscience.cdk.qsar.result.DoubleResult extends Object implements Serializable

Serialized Fields

value

Class org.openscience.cdk.qsar.result.DoubleResultType extends Object implements Serializable

Class org.openscience.cdk.qsar.result.IntegerArrayResult extends IntegerArrayResultType implements Serializable

Serialized Fields

array

Class org.openscience.cdk.qsar.result.IntegerArrayResultType extends Object implements Serializable

Serialized Fields

size

Class org.openscience.cdk.qsar.result.IntegerResult extends Object implements Serializable

Serialized Fields

value

Class org.openscience.cdk.qsar.result.IntegerResultType extends Object implements Serializable

Package org.openscience.cdk.smiles

Class org.openscience.cdk.smiles.InvPair extends Object implements Serializable

Serialized Fields

last

curr

atom

prime

Package org.openscience.cdk.tools

Class org.openscience.cdk.tools.HOSECodeGenerator extends Object implements Serializable

Serialized Fields

sphereNodes

sphereNodesWithAtoms

nextSphereNodes

sphere

maxSphere

spheres