Uses of Class
org.openscience.cdk.isomorphism.AtomMatcher

Packages that use AtomMatcher

Package	Description
org.openscience.cdk.isomorphism

Uses of AtomMatcher in org.openscience.cdk.isomorphism

Methods in org.openscience.cdk.isomorphism that return AtomMatcher

Modifier and Type	Method and Description
static AtomMatcher	AtomMatcher.forAny() Atoms are always compatible.
static AtomMatcher	AtomMatcher.forElement() Atoms are compatible if they are the same element.
static AtomMatcher	AtomMatcher.forQuery() Atoms are compatible if the second atom (atom2) is accepted by the IQueryAtom, atom1.

Methods in org.openscience.cdk.isomorphism with parameters of type AtomMatcher

Modifier and Type	Method and Description
static Pattern	VentoFoggia.findIdentical(IAtomContainer query, AtomMatcher atomMatcher, BondMatcher bondMatcher) Create a pattern which can be used to find molecules which are the same as the query structure.
static Pattern	VentoFoggia.findSubstructure(IAtomContainer query, AtomMatcher atomMatcher, BondMatcher bondMatcher) Create a pattern which can be used to find molecules which contain the query structure.