org.openscience.cdk.io

Class MDLRXNV3000Reader

java.lang.Object

org.openscience.cdk.io.ChemObjectIO

org.openscience.cdk.io.DefaultChemObjectReader

org.openscience.cdk.io.MDLRXNV3000Reader

All Implemented Interfaces:

Closeable, AutoCloseable, IChemObjectIO, IChemObjectReader, ISimpleChemObjectReader

public class MDLRXNV3000Reader
extends DefaultChemObjectReader

Class that implements the new MDL mol format introduced in August 2002. The overall syntax is compatible with the old format, but I consider the format completely different, and thus implemented a separate Reader for it.

Author:

Egon Willighagen <egonw@sci.kun.nl>

Source code:

master

Belongs to CDK module:

io

Keywords:

MDL V3000

Created on:

2003-10-05

Requires:

java1.4+

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.io.IChemObjectReader

IChemObjectReader.Mode

Field Summary

Fields inherited from class org.openscience.cdk.io.DefaultChemObjectReader

errorHandler, mode

Constructor Summary

Constructors

Constructor and Description
MDLRXNV3000Reader()
MDLRXNV3000Reader(InputStream input)
MDLRXNV3000Reader(InputStream input, IChemObjectReader.Mode mode)
MDLRXNV3000Reader(Reader in)
MDLRXNV3000Reader(Reader in, IChemObjectReader.Mode mode)

Method Summary

Modifier and Type	Method and Description
boolean	accepts(Class<? extends IChemObject> classObject)
boolean	accepts(IChemObject object)
void	close()
IResourceFormat	getFormat()
<T extends IChemObject> T	read(T object)
void	setReader(InputStream input)
void	setReader(Reader input)

Methods inherited from class org.openscience.cdk.io.DefaultChemObjectReader

fireFrameRead, handleError, handleError, handleError, handleError, setErrorHandler, setReaderMode

Methods inherited from class org.openscience.cdk.io.ChemObjectIO

addChemObjectIOListener, addSetting, addSettings, fireIOSettingQuestion, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.openscience.cdk.io.IChemObjectIO

addChemObjectIOListener, addSetting, addSettings, getIOSettings, getListeners, getSetting, getSetting, getSettings, hasSetting, removeChemObjectIOListener

Constructor Detail

MDLRXNV3000Reader

public MDLRXNV3000Reader(Reader in)

MDLRXNV3000Reader

public MDLRXNV3000Reader(Reader in,
                         IChemObjectReader.Mode mode)

MDLRXNV3000Reader

public MDLRXNV3000Reader(InputStream input)

MDLRXNV3000Reader

public MDLRXNV3000Reader(InputStream input,
                         IChemObjectReader.Mode mode)

MDLRXNV3000Reader

public MDLRXNV3000Reader()

Method Detail

getFormat

public IResourceFormat getFormat()

setReader

public void setReader(Reader input)
               throws CDKException

Throws:

CDKException

setReader

public void setReader(InputStream input)
               throws CDKException

Throws:

CDKException

accepts

public boolean accepts(Class<? extends IChemObject> classObject)

read

public <T extends IChemObject> T read(T object)
                               throws CDKException

Throws:

CDKException

accepts

public boolean accepts(IChemObject object)

close

public void close()
           throws IOException

Throws:

IOException