Class TwoToOneReactor
- java.lang.Object
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- bio.singa.simulation.reactions.reactors.AbstractGraphComplexReactor
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- bio.singa.simulation.reactions.reactors.TwoToOneReactor
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- All Implemented Interfaces:
ComplexReactor
public class TwoToOneReactor extends AbstractGraphComplexReactor
- Author:
- cl
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Field Summary
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Fields inherited from class bio.singa.simulation.reactions.reactors.AbstractGraphComplexReactor
logger
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Constructor Summary
Constructors Constructor Description TwoToOneReactor()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description voidapply()voidclear()voidcollectCandidates(List<ComplexEntity> substrateCandidates)List<ReactionElement>getProducts()List<ComplexEntity>getSecondarySubstrates()List<CandidateCondition>getSecondCandidateConditions()ComplexReactorinvert()voidsetSecondarySubstrates(List<ComplexEntity> secondarySubstrates)voidsetSecondCandidateConditions(List<CandidateCondition> secondCandidateConditions)-
Methods inherited from class bio.singa.simulation.reactions.reactors.AbstractGraphComplexReactor
filterCandidates, getBindingSite, getModification, getPrimaryCandidateConditions, getPrimaryProducts, getPrimarySubstrates, setModification, setPrimaryCandidateConditions, setPrimaryProducts, setPrimarySubstrates
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Method Detail
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getSecondCandidateConditions
public List<CandidateCondition> getSecondCandidateConditions()
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setSecondCandidateConditions
public void setSecondCandidateConditions(List<CandidateCondition> secondCandidateConditions)
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getSecondarySubstrates
public List<ComplexEntity> getSecondarySubstrates()
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setSecondarySubstrates
public void setSecondarySubstrates(List<ComplexEntity> secondarySubstrates)
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collectCandidates
public void collectCandidates(List<ComplexEntity> substrateCandidates)
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getProducts
public List<ReactionElement> getProducts()
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apply
public void apply()
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invert
public ComplexReactor invert()
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clear
public void clear()
- Specified by:
clearin interfaceComplexReactor- Overrides:
clearin classAbstractGraphComplexReactor
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