Package bio.singa.simulation.reactions.reactors

Class ReactionChainBuilder

java.lang.Object

bio.singa.simulation.reactions.reactors.ReactionChainBuilder

public class ReactionChainBuilder
extends Object

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	ReactionChainBuilder.AbstractReactorBuilder
static class	ReactionChainBuilder.AddReactionChainBuilder
static interface	ReactionChainBuilder.AddReactorPrimaryConditionStep
static interface	ReactionChainBuilder.AddReactorSecondarySubstrateStep
static class	ReactionChainBuilder.BindReactionChainBuilder
static interface	ReactionChainBuilder.BindReactorPrimaryConditionStep
static interface	ReactionChainBuilder.BindReactorSecondaryConditionStep
static interface	ReactionChainBuilder.BindReactorSecondarySubstrateStep
static interface	ReactionChainBuilder.ConnectorStep
static interface	ReactionChainBuilder.ReactorChoiceStep
static class	ReactionChainBuilder.ReleaseReactionChainBuilder
static interface	ReactionChainBuilder.ReleaseReactorPrimaryConditionStep
static interface	ReactionChainBuilder.ReleaseReactorSecondarySubstrateStep
static class	ReactionChainBuilder.RemoveReactionChainBuilder
static interface	ReactionChainBuilder.RemoveReactorPrimaryConditionStep
static interface	ReactionChainBuilder.RemoveReactorSecondarySubstrateStep

Constructor Summary

Constructors

Constructor	Description
ReactionChainBuilder()

Method Summary

Modifier and Type	Method	Description
static ReactionChainBuilder.AddReactorSecondarySubstrateStep	add(BindingSite bindingSite, ChemicalEntity chemicalEntity)
static ReactionChainBuilder.AddReactorSecondarySubstrateStep	add(ChemicalEntity chemicalEntity)
static ReactionChainBuilder.BindReactorPrimaryConditionStep	bind(BindingSite bindingSite, ChemicalEntity chemicalEntity)
static ReactionChainBuilder.BindReactorPrimaryConditionStep	bind(ChemicalEntity chemicalEntity)
static ReactionChainBuilder.ReleaseReactorPrimaryConditionStep	release(BindingSite bindingSite, ChemicalEntity chemicalEntity)
static ReactionChainBuilder.ReleaseReactorSecondarySubstrateStep	release(ChemicalEntity chemicalEntity)
static ReactionChainBuilder.RemoveReactorSecondarySubstrateStep	remove(BindingSite bindingSite, ChemicalEntity chemicalEntity)
static ReactionChainBuilder.RemoveReactorSecondarySubstrateStep	remove(ChemicalEntity chemicalEntity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReactionChainBuilder

public ReactionChainBuilder()

Method Detail

add

public static ReactionChainBuilder.AddReactorSecondarySubstrateStep add(BindingSite bindingSite,
                                                                        ChemicalEntity chemicalEntity)

add

public static ReactionChainBuilder.AddReactorSecondarySubstrateStep add(ChemicalEntity chemicalEntity)

bind

public static ReactionChainBuilder.BindReactorPrimaryConditionStep bind(BindingSite bindingSite,
                                                                        ChemicalEntity chemicalEntity)

bind

public static ReactionChainBuilder.BindReactorPrimaryConditionStep bind(ChemicalEntity chemicalEntity)

release

public static ReactionChainBuilder.ReleaseReactorPrimaryConditionStep release(BindingSite bindingSite,
                                                                              ChemicalEntity chemicalEntity)

release

public static ReactionChainBuilder.ReleaseReactorSecondarySubstrateStep release(ChemicalEntity chemicalEntity)

remove

public static ReactionChainBuilder.RemoveReactorSecondarySubstrateStep remove(BindingSite bindingSite,
                                                                              ChemicalEntity chemicalEntity)

remove

public static ReactionChainBuilder.RemoveReactorSecondarySubstrateStep remove(ChemicalEntity chemicalEntity)