Package bio.singa.simulation.reactions.reactors

Class ReactionChainBuilder.BindReactionChainBuilder

java.lang.Object

bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

bio.singa.simulation.reactions.reactors.ReactionChainBuilder.BindReactionChainBuilder

All Implemented Interfaces:

ReactionChainBuilder.BindReactorPrimaryConditionStep, ReactionChainBuilder.BindReactorSecondaryConditionStep, ReactionChainBuilder.BindReactorSecondarySubstrateStep, ReactionChainBuilder.ConnectorStep, ReactionChainBuilder.ReactorChoiceStep

Enclosing class:

ReactionChainBuilder

public static class ReactionChainBuilder.BindReactionChainBuilder
extends ReactionChainBuilder.AbstractReactorBuilder
implements ReactionChainBuilder.BindReactorPrimaryConditionStep, ReactionChainBuilder.BindReactorSecondaryConditionStep, ReactionChainBuilder.BindReactorSecondarySubstrateStep

Field Summary

Fields inherited from class bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

bindingSite, considerInversion, modification, primaryCandidateConditions, primaryEntity, reactors, secondaryCandidateConditions, secondaryEntity

Constructor Summary

Constructors

Constructor	Description
BindReactionChainBuilder(BindingSite bindingSite, ChemicalEntity primaryEntity)
BindReactionChainBuilder(ChemicalEntity primaryEntity)

Method Summary

Modifier and Type	Method	Description
ReactionChainBuilder.BindReactorPrimaryConditionStep	primaryCondition(CandidateCondition condition)
ReactionChainBuilder.BindReactorSecondaryConditionStep	secondaryCondition(CandidateCondition condition)
ReactionChainBuilder.BindReactorSecondaryConditionStep	to(ChemicalEntity secondaryEntity)

Methods inherited from class bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

add, add, and, bind, bind, build, considerInversion, identifier, oneToOneAssignment, release, release, remove, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface bio.singa.simulation.reactions.reactors.ReactionChainBuilder.ConnectorStep

and, build, considerInversion, identifier

Constructor Detail

BindReactionChainBuilder

public BindReactionChainBuilder(BindingSite bindingSite,
                                ChemicalEntity primaryEntity)

BindReactionChainBuilder

public BindReactionChainBuilder(ChemicalEntity primaryEntity)

Method Detail

primaryCondition

public ReactionChainBuilder.BindReactorPrimaryConditionStep primaryCondition(CandidateCondition condition)

Specified by:

primaryCondition in interface ReactionChainBuilder.BindReactorPrimaryConditionStep

to

public ReactionChainBuilder.BindReactorSecondaryConditionStep to(ChemicalEntity secondaryEntity)

Specified by:

to in interface ReactionChainBuilder.BindReactorSecondarySubstrateStep

secondaryCondition

public ReactionChainBuilder.BindReactorSecondaryConditionStep secondaryCondition(CandidateCondition condition)

Specified by:

secondaryCondition in interface ReactionChainBuilder.BindReactorSecondaryConditionStep