Package bio.singa.simulation.reactions.reactors

Class ReactionChainBuilder.AddReactionChainBuilder

java.lang.Object

bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AddReactionChainBuilder

All Implemented Interfaces:

ReactionChainBuilder.AddReactorPrimaryConditionStep, ReactionChainBuilder.AddReactorSecondarySubstrateStep, ReactionChainBuilder.ConnectorStep, ReactionChainBuilder.ReactorChoiceStep

Enclosing class:

ReactionChainBuilder

public static class ReactionChainBuilder.AddReactionChainBuilder
extends ReactionChainBuilder.AbstractReactorBuilder
implements ReactionChainBuilder.AddReactorPrimaryConditionStep, ReactionChainBuilder.AddReactorSecondarySubstrateStep

Field Summary

Fields inherited from class bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

bindingSite, considerInversion, modification, primaryCandidateConditions, primaryEntity, reactors, secondaryCandidateConditions, secondaryEntity

Constructor Summary

Constructors

Constructor	Description
AddReactionChainBuilder(BindingSite bindingSite, ChemicalEntity secondaryEntity)
AddReactionChainBuilder(ChemicalEntity secondaryEntity)

Method Summary

Modifier and Type	Method	Description
ReactionChainBuilder.AddReactorPrimaryConditionStep	condition(CandidateCondition condition)
ReactionChainBuilder.AddReactorPrimaryConditionStep	to(ChemicalEntity primaryEntity)

Methods inherited from class bio.singa.simulation.reactions.reactors.ReactionChainBuilder.AbstractReactorBuilder

add, add, and, bind, bind, build, considerInversion, identifier, oneToOneAssignment, release, release, remove, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface bio.singa.simulation.reactions.reactors.ReactionChainBuilder.ConnectorStep

and, build, considerInversion, identifier

Constructor Detail

AddReactionChainBuilder

public AddReactionChainBuilder(BindingSite bindingSite,
                               ChemicalEntity secondaryEntity)

AddReactionChainBuilder

public AddReactionChainBuilder(ChemicalEntity secondaryEntity)

Method Detail

condition

public ReactionChainBuilder.AddReactorPrimaryConditionStep condition(CandidateCondition condition)

Specified by:

condition in interface ReactionChainBuilder.AddReactorPrimaryConditionStep

to

public ReactionChainBuilder.AddReactorPrimaryConditionStep to(ChemicalEntity primaryEntity)

Specified by:

to in interface ReactionChainBuilder.AddReactorSecondarySubstrateStep