Package bio.singa.simulation.reactions.modifications

Class AbstractComplexEntityModification

java.lang.Object

bio.singa.simulation.reactions.modifications.AbstractComplexEntityModification

All Implemented Interfaces:

ComplexEntityModification

Direct Known Subclasses:

AddModification, BindModification, ReleaseModification, RemoveModification

public abstract class AbstractComplexEntityModification
extends Object
implements ComplexEntityModification

Field Summary

Fields

Modifier and Type	Field	Description
protected static org.slf4j.Logger	logger

Constructor Summary

Constructors

Constructor	Description
AbstractComplexEntityModification(BindingSite bindingSite)

Method Summary

Modifier and Type	Method	Description
void	addCandidate(ComplexEntity candidate)
void	clear()
BindingSite	getBindingSite()
List<ComplexEntity>	getCandidates()
ChemicalEntity	getPrimaryEntity()
List<ComplexEntity>	getResults()
ChemicalEntity	getSecondaryEntity()
void	setBindingSite(BindingSite bindingSite)
void	setCandidates(List<ComplexEntity> candidates)
void	setPrimaryEntity(ChemicalEntity primaryEntity)
void	setResults(List<ComplexEntity> results)
void	setSecondaryEntity(ChemicalEntity secondaryEntity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface bio.singa.simulation.reactions.modifications.ComplexEntityModification

apply, invert

Field Detail

logger

protected static final org.slf4j.Logger logger

Constructor Detail

AbstractComplexEntityModification

public AbstractComplexEntityModification(BindingSite bindingSite)

Method Detail

getBindingSite

public BindingSite getBindingSite()

Specified by:

getBindingSite in interface ComplexEntityModification

setBindingSite

public void setBindingSite(BindingSite bindingSite)

getPrimaryEntity

public ChemicalEntity getPrimaryEntity()

Specified by:

getPrimaryEntity in interface ComplexEntityModification

setPrimaryEntity

public void setPrimaryEntity(ChemicalEntity primaryEntity)

Specified by:

setPrimaryEntity in interface ComplexEntityModification

getSecondaryEntity

public ChemicalEntity getSecondaryEntity()

Specified by:

getSecondaryEntity in interface ComplexEntityModification

setSecondaryEntity

public void setSecondaryEntity(ChemicalEntity secondaryEntity)

Specified by:

setSecondaryEntity in interface ComplexEntityModification

getCandidates

public List<ComplexEntity> getCandidates()

setCandidates

public void setCandidates(List<ComplexEntity> candidates)

addCandidate

public void addCandidate(ComplexEntity candidate)

Specified by:

addCandidate in interface ComplexEntityModification

getResults

public List<ComplexEntity> getResults()

Specified by:

getResults in interface ComplexEntityModification

setResults

public void setResults(List<ComplexEntity> results)

clear

public void clear()

Specified by:

clear in interface ComplexEntityModification