Package bio.singa.simulation.reactions

Class ReactionNetworkGenerator

java.lang.Object

bio.singa.simulation.reactions.ReactionNetworkGenerator

public class ReactionNetworkGenerator
extends Object

Author:

cl

Constructor Summary

Constructors

Constructor	Description
ReactionNetworkGenerator()

Method Summary

Modifier and Type	Method	Description
void	add(ReactionChain reactionChain)
void	addPreReaction(ReactionChain reactionChain)
Set<ComplexEntity>	createInitialEntities(Map<ChemicalEntity,Set<BindingSite>> bindingSiteMapping)
Map<ChemicalEntity,Set<BindingSite>>	determineBindingSites()
void	generate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReactionNetworkGenerator

public ReactionNetworkGenerator()

Method Detail

add

public void add(ReactionChain reactionChain)

addPreReaction

public void addPreReaction(ReactionChain reactionChain)

generate

public void generate()

determineBindingSites

public Map<ChemicalEntity,Set<BindingSite>> determineBindingSites()

createInitialEntities

public Set<ComplexEntity> createInitialEntities(Map<ChemicalEntity,Set<BindingSite>> bindingSiteMapping)