Package bio.singa.simulation.model.sections

Class CellRegion

java.lang.Object

bio.singa.simulation.model.sections.CellRegion

public class CellRegion
extends Object

Author:

cl

Constructor Summary

Constructors

Constructor	Description
CellRegion(String identifier)
CellRegion(String identifier, bio.singa.features.identifiers.GoTerm goTerm)

Method Summary

Modifier and Type	Method	Description
void	addSubsection(CellTopology topology, CellSubsection subsection)
boolean	equals(Object o)
bio.singa.mathematics.geometry.model.Polygon	getAreaRepresentation()
bio.singa.features.identifiers.GoTerm	getGoTerm()
String	getIdentifier()
CellSubsection	getInnerSubsection()
CellSubsection	getMembraneSubsection()
CellSubsection	getOuterSubsection()
Collection<CellSubsection>	getSubsections()
boolean	has(CellTopology topology)
int	hashCode()
boolean	hasInner()
boolean	hasMembrane()
boolean	hasOuter()
void	setAreaRepresentation(bio.singa.mathematics.geometry.model.Polygon areaRepresentation)
ConcentrationContainer	setUpConcentrationContainer()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

CellRegion

public CellRegion(String identifier)

CellRegion

public CellRegion(String identifier,
                  bio.singa.features.identifiers.GoTerm goTerm)

Method Detail

getIdentifier

public String getIdentifier()

getGoTerm

public bio.singa.features.identifiers.GoTerm getGoTerm()

addSubsection

public void addSubsection(CellTopology topology,
                          CellSubsection subsection)

getAreaRepresentation

public bio.singa.mathematics.geometry.model.Polygon getAreaRepresentation()

setAreaRepresentation

public void setAreaRepresentation(bio.singa.mathematics.geometry.model.Polygon areaRepresentation)

getSubsections

public Collection<CellSubsection> getSubsections()

setUpConcentrationContainer

public ConcentrationContainer setUpConcentrationContainer()

getInnerSubsection

public CellSubsection getInnerSubsection()

getOuterSubsection

public CellSubsection getOuterSubsection()

getMembraneSubsection

public CellSubsection getMembraneSubsection()

has

public boolean has(CellTopology topology)

hasMembrane

public boolean hasMembrane()

hasInner

public boolean hasInner()

hasOuter

public boolean hasOuter()

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object