Package bio.singa.simulation.model.modules.qualitative.implementations

Class VolumeLikeAgentContainment

java.lang.Object

bio.singa.simulation.model.modules.AbstractUpdateModule

bio.singa.simulation.model.modules.qualitative.QualitativeModule

bio.singa.simulation.model.modules.qualitative.implementations.VolumeLikeAgentContainment

All Implemented Interfaces:

UpdateModule, Runnable

public class VolumeLikeAgentContainment
extends QualitativeModule

For vesicles state changes upon entering certain regions represented by volume like agents

Author:

cl

Constructor Summary

Constructors

Constructor	Description
VolumeLikeAgentContainment()

Method Summary

Modifier and Type	Method	Description
void	calculateUpdates()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()

Methods inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

initialize

Methods inherited from class bio.singa.simulation.model.modules.AbstractUpdateModule

addEvidence, addReferencedEntities, addReferencedEntity, checkFeatures, equals, getEvidence, getFeature, getFeatureManager, getFeatures, getIdentifier, getReferencedChemicalEntities, getRequiredFeatures, getScaledFeature, getSimulation, getState, hashCode, reset, run, setEvidence, setFeature, setFeatureManager, setIdentifier, setSimulation, setState, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

VolumeLikeAgentContainment

public VolumeLikeAgentContainment()

Method Detail

calculateUpdates

public void calculateUpdates()

Specified by:

calculateUpdates in class AbstractUpdateModule

optimizeTimeStep

public void optimizeTimeStep()

Specified by:

optimizeTimeStep in class AbstractUpdateModule

onReset

public void onReset()

onCompletion

public void onCompletion()