Package bio.singa.simulation.model.modules.displacement.implementations

Class VesicleConfinedDiffusion

java.lang.Object

bio.singa.simulation.model.modules.AbstractUpdateModule

bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

bio.singa.simulation.model.modules.displacement.implementations.VesicleConfinedDiffusion

All Implemented Interfaces:

UpdateModule, Runnable

public class VesicleConfinedDiffusion
extends DisplacementBasedModule

Author:

cl

Constructor Summary

Constructors

Constructor	Description
VesicleConfinedDiffusion()

Method Summary

Modifier and Type	Method	Description
DisplacementDelta	calculateDisplacement(Vesicle vesicle)
void	checkFeatures()
CellRegion	getConfinedVolume()
String	getConfiningState()

Methods inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

addDeltaFunction, calculateUpdates, determineLocalDeviation, initialize, onCompletion, onReset, optimizeTimeStep, toString

Methods inherited from class bio.singa.simulation.model.modules.AbstractUpdateModule

addEvidence, addReferencedEntities, addReferencedEntity, equals, getEvidence, getFeature, getFeatureManager, getFeatures, getIdentifier, getReferencedChemicalEntities, getRequiredFeatures, getScaledFeature, getSimulation, getState, hashCode, reset, run, setEvidence, setFeature, setFeatureManager, setIdentifier, setSimulation, setState

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

VesicleConfinedDiffusion

public VesicleConfinedDiffusion()

Method Detail

calculateDisplacement

public DisplacementDelta calculateDisplacement(Vesicle vesicle)

getConfiningState

public String getConfiningState()

getConfinedVolume

public CellRegion getConfinedVolume()

checkFeatures

public void checkFeatures()

Specified by:

checkFeatures in interface UpdateModule

Overrides:

checkFeatures in class AbstractUpdateModule