Package bio.singa.simulation.model.modules.concentration.specifity

Interface UpdateSpecificity<DeltaFunctionType extends AbstractDeltaFunction>

All Known Implementing Classes:

EntitySpecific, SectionSpecific, UpdatableSpecific

public interface UpdateSpecificity<DeltaFunctionType extends AbstractDeltaFunction>

Determines how fine-grained the updates need to be calculated. There are three levels of specificity:

• EntitySpecific - once for every chemical entity in every subsection of a updatable
• SectionSpecific - once for every subsection of a updatable
• UpdatableSpecific - once for every updatable

Author:

cl

Method Summary

Modifier and Type	Method	Description
void	addDeltaFunction(DeltaFunctionType deltaFunctionType)	Adds the implementation of a AbstractDeltaFunction to be calculated during simulation.
void	determineDeltas(ConcentrationContainer container)	Determines all deltas for a Concentration container.
void	processContainer(ConcentrationContainer container)	Processes a concentration container.
void	processContainer(ConcentrationContainer container, CellSubsection subsection, ChemicalEntity chemicalEntity)

Method Detail

processContainer

void processContainer(ConcentrationContainer container)

Processes a concentration container.

Parameters:

container - The container.

processContainer

void processContainer(ConcentrationContainer container,
                      CellSubsection subsection,
                      ChemicalEntity chemicalEntity)

determineDeltas

void determineDeltas(ConcentrationContainer container)

Determines all deltas for a Concentration container.

Parameters:

container - The container.

addDeltaFunction

void addDeltaFunction(DeltaFunctionType deltaFunctionType)

Adds the implementation of a AbstractDeltaFunction to be calculated during simulation.

Parameters:

deltaFunctionType - The delta function.