Package bio.singa.simulation.model.modules.concentration.imlementations.transport

Class LateralMembraneDiffusion

java.lang.Object

bio.singa.simulation.model.modules.AbstractUpdateModule

bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule<EntityDeltaFunction>

bio.singa.simulation.model.modules.concentration.imlementations.transport.LateralMembraneDiffusion

All Implemented Interfaces:

UpdateModule, Runnable

public class LateralMembraneDiffusion
extends ConcentrationBasedModule<EntityDeltaFunction>

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static interface	LateralMembraneDiffusion.BuildStep
static interface	LateralMembraneDiffusion.EntityLimitationStep
static class	LateralMembraneDiffusion.LateralMembraneDiffusionBuilder
static interface	LateralMembraneDiffusion.SectionLimitationStep

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

supplier

Constructor Summary

Constructors

Constructor	Description
LateralMembraneDiffusion()

Method Summary

Modifier and Type	Method	Description
void	checkFeatures()
static ModuleBuilder	getBuilder(Simulation simulation)
static LateralMembraneDiffusion.EntityLimitationStep	inSimulation(Simulation simulation)

Methods inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

addDeltaFunction, calculateUpdates, deltaIsValid, determineLargestLocalError, getApplicationCondition, getRestrictedSubsection, getScaledFeature, getScaledFeature, getScope, getSpecificity, getSupplier, handleDelta, inBetweenHalfSteps, initialize, onCompletion, onReset, optimizeTimeStep, restrictApplication, setApplicationCondition, setRestrictedSubsection

Methods inherited from class bio.singa.simulation.model.modules.AbstractUpdateModule

addEvidence, addReferencedEntities, addReferencedEntity, equals, getEvidence, getFeature, getFeatureManager, getFeatures, getIdentifier, getReferencedChemicalEntities, getRequiredFeatures, getSimulation, getState, hashCode, reset, run, setEvidence, setFeature, setFeatureManager, setIdentifier, setSimulation, setState, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

LateralMembraneDiffusion

public LateralMembraneDiffusion()

Method Detail

inSimulation

public static LateralMembraneDiffusion.EntityLimitationStep inSimulation(Simulation simulation)

getBuilder

public static ModuleBuilder getBuilder(Simulation simulation)

checkFeatures

public void checkFeatures()

Specified by:

checkFeatures in interface UpdateModule

Overrides:

checkFeatures in class AbstractUpdateModule