Package bio.singa.simulation.model.modules.concentration.imlementations.transport

Class EndocytoticPitAbsorption

java.lang.Object

bio.singa.simulation.model.modules.AbstractUpdateModule

bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule<UpdatableDeltaFunction>

bio.singa.simulation.model.modules.concentration.imlementations.transport.EndocytoticPitAbsorption

All Implemented Interfaces:

UpdateModule, Runnable

public class EndocytoticPitAbsorption
extends ConcentrationBasedModule<UpdatableDeltaFunction>

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static interface	EndocytoticPitAbsorption.AccelerationStep
static interface	EndocytoticPitAbsorption.BuildStep
static class	EndocytoticPitAbsorption.EndocytoticPitAbsorptionBuilder
static interface	EndocytoticPitAbsorption.EntityStep
static interface	EndocytoticPitAbsorption.InhibitionStep
static interface	EndocytoticPitAbsorption.RateStep

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

supplier

Constructor Summary

Constructors

Constructor	Description
EndocytoticPitAbsorption()

Method Summary

Modifier and Type	Method	Description
static ModuleBuilder	getBuilder(Simulation simulation)
static EndocytoticPitAbsorption.EntityStep	inSimulation(Simulation simulation)
void	postConstruct()

Methods inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

addDeltaFunction, calculateUpdates, deltaIsValid, determineLargestLocalError, getApplicationCondition, getRestrictedSubsection, getScaledFeature, getScaledFeature, getScope, getSpecificity, getSupplier, handleDelta, inBetweenHalfSteps, initialize, onCompletion, onReset, optimizeTimeStep, restrictApplication, setApplicationCondition, setRestrictedSubsection

Methods inherited from class bio.singa.simulation.model.modules.AbstractUpdateModule

addEvidence, addReferencedEntities, addReferencedEntity, checkFeatures, equals, getEvidence, getFeature, getFeatureManager, getFeatures, getIdentifier, getReferencedChemicalEntities, getRequiredFeatures, getSimulation, getState, hashCode, reset, run, setEvidence, setFeature, setFeatureManager, setIdentifier, setSimulation, setState, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

EndocytoticPitAbsorption

public EndocytoticPitAbsorption()

Method Detail

inSimulation

public static EndocytoticPitAbsorption.EntityStep inSimulation(Simulation simulation)

getBuilder

public static ModuleBuilder getBuilder(Simulation simulation)

postConstruct

public void postConstruct()