Uses of Class
bio.singa.simulation.model.modules.concentration.imlementations.reactions.Reaction

Packages that use Reaction

Package	Description
bio.singa.simulation.export.format
bio.singa.simulation.model.modules.concentration.imlementations.reactions
bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws

Uses of Reaction in bio.singa.simulation.export.format

Methods in bio.singa.simulation.export.format with parameters of type Reaction

Modifier and Type	Method	Description
static String	FormatReactionEquation.formatASCII(Reaction reaction)
static Map<String,List<String>>	FormatFeature.formatRates(Reaction reaction)	map: key: feature - value: list: evidence
static List<String>	FormatReactionEquation.formatTex(Reaction reaction)
static List<String>	FormatReactionKinetics.formatTex(Reaction reaction)

Uses of Reaction in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Fields in bio.singa.simulation.model.modules.concentration.imlementations.reactions declared as Reaction

Modifier and Type	Field	Description
protected Reaction	ReactionBuilder.GeneralReactionBuilder.reaction

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions that return Reaction

Modifier and Type	Method	Description
Reaction	ReactionBuilder.FinalStep.build()
Reaction	ReactionBuilder.GeneralReactionBuilder.build()
Reaction	ReactionBuilder.RuleBasedBuilder.build()
Reaction	ReactionBuilder.GeneralReactionBuilder.createModule(Simulation simulation)
Reaction	ReactionBuilder.GeneralReactionBuilder.getModule()

Constructors in bio.singa.simulation.model.modules.concentration.imlementations.reactions with parameters of type Reaction

Constructor	Description
ReactionEvent(Reaction reaction, ReactantSet reactants)

Uses of Reaction in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws

Fields in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws declared as Reaction

Modifier and Type	Field	Description
protected Reaction	AbstractKineticLaw.reaction

Constructors in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws with parameters of type Reaction

Constructor	Description
AbstractKineticLaw(Reaction reaction)
DynamicKineticLaw(Reaction reaction, String kineticLawString)
IrreversibleKineticLaw(Reaction reaction)
MichaelisMentenKineticLaw(Reaction reaction)
ReversibleKineticLaw(Reaction reaction)