Uses of Class
bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants.Reactant

Packages that use Reactant

Package	Description
bio.singa.simulation.export.format
bio.singa.simulation.model.modules.concentration.imlementations.reactions
bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas
bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws
bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants

Uses of Reactant in bio.singa.simulation.export.format

Method parameters in bio.singa.simulation.export.format with type arguments of type Reactant

Modifier and Type	Method	Description
static String	FormatReactionEquation.formatASCII(List<Reactant> substrates, List<Reactant> products, List<Reactant> catalysts, KineticLaw law)

Uses of Reactant in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions with parameters of type Reactant

Modifier and Type	Method	Description
ReactionBuilder.ParameterStep	ReactionBuilder.GeneralReactionBuilder.referenceParameter(Reactant reactant)
ReactionBuilder.ParameterStep	ReactionBuilder.GeneralReactionBuilder.referenceParameter(String parameterIdentifier, Reactant reactant)
ReactionBuilder.ParameterStep	ReactionBuilder.ParameterStep.referenceParameter(Reactant reactant)
ReactionBuilder.ParameterStep	ReactionBuilder.ParameterStep.referenceParameter(String parameterIdentifier, Reactant reactant)

Uses of Reactant in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas that return Reactant

Modifier and Type	Method	Description
Reactant	ReactantConcentration.getReactant()

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas that return types with arguments of type Reactant

Modifier and Type	Method	Description
List<Reactant>	DeltaBehavior.getCatalysts()
List<Reactant>	MembraneRestrictedBehavior.getCatalysts()
List<Reactant>	NodeBehavior.getCatalysts()
List<Reactant>	DeltaBehavior.getProducts()
List<Reactant>	MembraneRestrictedBehavior.getProducts()
List<Reactant>	NodeBehavior.getProducts()
List<Reactant>	DeltaBehavior.getSubstrates()
List<Reactant>	MembraneRestrictedBehavior.getSubstrates()
List<Reactant>	NodeBehavior.getSubstrates()

Method parameters in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas with type arguments of type Reactant

Modifier and Type	Method	Description
List<ReactantConcentration>	DeltaBehavior.collectReactants(Collection<Reactant> reactants)
List<ReactantConcentration>	MembraneRestrictedBehavior.collectReactants(Collection<Reactant> reactants)
List<ReactantConcentration>	NodeBehavior.collectReactants(Collection<Reactant> reactants)
List<ReactantDelta>	DeltaBehavior.generateDeltas(List<Reactant> reactants, double velocity)
List<ReactantDelta>	MembraneRestrictedBehavior.generateDeltas(List<Reactant> reactants, double velocity)
List<ReactantDelta>	NodeBehavior.generateDeltas(List<Reactant> reactants, double velocity)

Constructors in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.deltas with parameters of type Reactant

Constructor	Description
ReactantConcentration(Reactant reactant, double concentration)

Uses of Reactant in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws that return types with arguments of type Reactant

Modifier and Type	Method	Description
Map<String,Reactant>	DynamicKineticLaw.getConcentrationMap()

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws with parameters of type Reactant

Modifier and Type	Method	Description
void	DynamicKineticLaw.referenceReactant(Reactant reactant)
void	DynamicKineticLaw.referenceReactant(String parameterIdentifier, Reactant reactant)

Method parameters in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.kineticlaws with type arguments of type Reactant

Modifier and Type	Method	Description
void	DynamicKineticLaw.setConcentrationMap(Map<String,Reactant> concentrationMap)

Uses of Reactant in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants that return types with arguments of type Reactant

Modifier and Type	Method	Description
List<Reactant>	ReactantBehavior.getCatalysts()
List<Reactant>	ReactantSet.getCatalysts()
List<Reactant>	RuleBasedReactantBehavior.getCatalysts()
List<Reactant>	StaticReactantBehavior.getCatalysts()
List<Reactant>	ReactantBehavior.getProducts()
List<Reactant>	ReactantSet.getProducts()
List<Reactant>	RuleBasedReactantBehavior.getProducts()
List<Reactant>	StaticReactantBehavior.getProducts()
List<Reactant>	ReactantBehavior.getSubstrates()
List<Reactant>	ReactantSet.getSubstrates()
List<Reactant>	RuleBasedReactantBehavior.getSubstrates()
List<Reactant>	StaticReactantBehavior.getSubstrates()

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants with parameters of type Reactant

Modifier and Type	Method	Description
void	StaticReactantBehavior.addCatalyst(Reactant catalyst)
void	StaticReactantBehavior.addProduct(Reactant product)
void	ReactantBehavior.addReactant(Reactant reactant)
void	RuleBasedReactantBehavior.addReactant(Reactant reactant)
void	StaticReactantBehavior.addReactant(Reactant reactant)
void	StaticReactantBehavior.addSubstrate(Reactant substrate)

Method parameters in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants with type arguments of type Reactant

Modifier and Type	Method	Description
void	StaticReactantBehavior.setCatalysts(List<Reactant> catalysts)
void	StaticReactantBehavior.setProducts(List<Reactant> products)
void	StaticReactantBehavior.setSubstrates(List<Reactant> substrates)

Constructor parameters in bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants with type arguments of type Reactant

Constructor	Description
ReactantSet(List<Reactant> substrates, List<Reactant> products)
ReactantSet(List<Reactant> substrates, List<Reactant> products, List<Reactant> catalysts)