Reaction (singa-simulation 0.7.0 API)

java.lang.Object
- bio.singa.simulation.model.modules.AbstractUpdateModule
- - bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule<UpdatableDeltaFunction>
  - - bio.singa.simulation.model.modules.concentration.imlementations.reactions.Reaction

All Implemented Interfaces:: UpdateModule, Runnable

public class Reaction
extends ConcentrationBasedModule<UpdatableDeltaFunction>

Author:: cl

Field Summary
- Fields inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule
  supplier

Constructor Summary

Constructors
Constructor Description

Reaction()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addCondition(ConcentrationCondition condition)`
`TreeMap<Integer,ConcentrationCondition>`	`getConditions()`
`KineticLaw`	`getKineticLaw()`
`ReactantBehavior`	`getReactantBehavior()`
`void`	`setConditions(TreeMap<Integer,ConcentrationCondition> conditions)`
`void`	`setKineticLaw(KineticLaw kineticLaw)`
`void`	`setReactantBehavior(ReactantBehavior reactantBehavior)`

Methods inherited from class bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule
addDeltaFunction, calculateUpdates, deltaIsValid, determineLargestLocalError, getApplicationCondition, getRestrictedSubsection, getScaledFeature, getScaledFeature, getScope, getSpecificity, getSupplier, handleDelta, inBetweenHalfSteps, initialize, onCompletion, onReset, optimizeTimeStep, restrictApplication, setApplicationCondition, setRestrictedSubsection

Methods inherited from class bio.singa.simulation.model.modules.AbstractUpdateModule
addEvidence, addReferencedEntities, addReferencedEntity, checkFeatures, equals, getEvidence, getFeature, getFeatureManager, getFeatures, getIdentifier, getReferencedChemicalEntities, getRequiredFeatures, getSimulation, getState, hashCode, reset, run, setEvidence, setFeature, setFeatureManager, setIdentifier, setSimulation, setState, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail
- Reaction
```
public Reaction()
```

Method Detail

getKineticLaw
```
public KineticLaw getKineticLaw()
```

setKineticLaw

public void setKineticLaw(KineticLaw kineticLaw)

getReactantBehavior

public ReactantBehavior getReactantBehavior()

setReactantBehavior

public void setReactantBehavior(ReactantBehavior reactantBehavior)

getConditions

public TreeMap<Integer,ConcentrationCondition> getConditions()

addCondition

public void addCondition(ConcentrationCondition condition)

setConditions

public void setConditions(TreeMap<Integer,ConcentrationCondition> conditions)