Uses of Class
bio.singa.simulation.model.modules.concentration.ConcentrationBasedModule

Packages that use ConcentrationBasedModule

Package	Description
bio.singa.simulation.model.modules.concentration
bio.singa.simulation.model.modules.concentration.imlementations.reactions
bio.singa.simulation.model.modules.concentration.imlementations.transport
bio.singa.simulation.model.modules.concentration.scope
bio.singa.simulation.model.modules.concentration.specifity

Uses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration

Classes in bio.singa.simulation.model.modules.concentration with type parameters of type ConcentrationBasedModule

Modifier and Type	Interface	Description
interface	ModuleBuilder<ModuleType extends ConcentrationBasedModule>

Methods in bio.singa.simulation.model.modules.concentration with type parameters of type ConcentrationBasedModule

Modifier and Type	Method	Description
static <ModuleImplementation extends ConcentrationBasedModule> ModuleImplementation	ModuleFactory.setupModule(Class<ModuleImplementation> moduleCLass, ModuleFactory.Scope scope, ModuleFactory.Specificity specificity)	Creates a new module with the specified setup.

Uses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Subclasses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Modifier and Type	Class	Description
class	Reaction

Uses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.imlementations.transport

Subclasses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.imlementations.transport

Modifier and Type	Class	Description
class	Diffusion	Diffusion is the fundamental force governing the random movement of molecules in cells.
class	EndocytoticPitAbsorption
class	LateralMembraneDiffusion
class	MembraneDiffusion	The membrane diffusion module describes the movement of chemical entities across Membranes driven by the MembranePermeability of the cargo.
class	PorousDiffusion	Calculates diffusion through large pores (pore significantly larger than the cargo) in the membrane.
class	SingleFileChannelMembraneTransport	The single file channel transport describes the movement of cargo molecules through Transporter proteins, so called membrane channels.

Uses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.scope

Constructors in bio.singa.simulation.model.modules.concentration.scope with parameters of type ConcentrationBasedModule

Constructor	Description
DependentUpdate(ConcentrationBasedModule<?> module)	Initializes the update scope for the corresponding module.
IndependentUpdate(ConcentrationBasedModule module)	Initializes the update scope for the corresponding module.
SemiDependentUpdate(ConcentrationBasedModule module)	Initializes the update scope for the corresponding module.

Uses of ConcentrationBasedModule in bio.singa.simulation.model.modules.concentration.specifity

Constructors in bio.singa.simulation.model.modules.concentration.specifity with parameters of type ConcentrationBasedModule

Constructor	Description
EntitySpecific(ConcentrationBasedModule<EntityDeltaFunction> module)	Initializes the update specificity for the corresponding module.
SectionSpecific(ConcentrationBasedModule module)	Initializes the update specificity for the corresponding module.
UpdatableSpecific(ConcentrationBasedModule module)	Initializes the update specificity for the corresponding module.