Uses of Class
bio.singa.simulation.model.modules.AbstractUpdateModule

Packages that use AbstractUpdateModule

Package	Description
bio.singa.simulation.model.modules.concentration
bio.singa.simulation.model.modules.concentration.imlementations.reactions
bio.singa.simulation.model.modules.concentration.imlementations.transport
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.modules.displacement.implementations
bio.singa.simulation.model.modules.qualitative
bio.singa.simulation.model.modules.qualitative.implementations

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration

Modifier and Type	Class	Description
class	ConcentrationBasedModule<DeltaFunctionType extends AbstractDeltaFunction>	Concentration based modules handle updates that are applied to the concentrations in Updatables during a simulation.

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Modifier and Type	Class	Description
class	Reaction

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration.imlementations.transport

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.concentration.imlementations.transport

Modifier and Type	Class	Description
class	Diffusion	Diffusion is the fundamental force governing the random movement of molecules in cells.
class	EndocytoticPitAbsorption
class	LateralMembraneDiffusion
class	MembraneDiffusion	The membrane diffusion module describes the movement of chemical entities across Membranes driven by the MembranePermeability of the cargo.
class	PorousDiffusion	Calculates diffusion through large pores (pore significantly larger than the cargo) in the membrane.
class	SingleFileChannelMembraneTransport	The single file channel transport describes the movement of cargo molecules through Transporter proteins, so called membrane channels.

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.displacement

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.displacement

Modifier and Type	Class	Description
class	DisplacementBasedModule

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.displacement.implementations

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.displacement.implementations

Modifier and Type	Class	Description
class	EndocytosisActinBoost
class	VesicleConfinedDiffusion
class	VesicleCytoplasmDiffusion
class	VesicleTransport

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.qualitative

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.qualitative

Modifier and Type	Class	Description
class	QualitativeModule

Uses of AbstractUpdateModule in bio.singa.simulation.model.modules.qualitative.implementations

Subclasses of AbstractUpdateModule in bio.singa.simulation.model.modules.qualitative.implementations

Modifier and Type	Class	Description
class	ClathrinMediatedEndocytosis
class	ConcentrationApplier
class	ConcentrationStateChange
class	DiffusivityScaling
class	LineLikeAgentAttachment
class	VesicleFusion
class	VolumeLikeAgentContainment	For vesicles state changes upon entering certain regions represented by volume like agents