Package bio.singa.simulation.model.modules

Interface UpdateModule

All Superinterfaces:

Runnable

All Known Implementing Classes:

AbstractUpdateModule, ClathrinMediatedEndocytosis, ConcentrationApplier, ConcentrationBasedModule, ConcentrationStateChange, Diffusion, DiffusivityScaling, DisplacementBasedModule, EndocytosisActinBoost, EndocytoticPitAbsorption, LateralMembraneDiffusion, LineLikeAgentAttachment, MembraneDiffusion, PorousDiffusion, QualitativeModule, Reaction, SingleFileChannelMembraneTransport, VesicleConfinedDiffusion, VesicleCytoplasmDiffusion, VesicleFusion, VesicleTransport, VolumeLikeAgentContainment

public interface UpdateModule
extends Runnable

Author:

cl

Method Summary

Modifier and Type	Method	Description
void	checkFeatures()
List<bio.singa.features.model.Evidence>	getEvidence()
Collection<bio.singa.features.model.Feature<?>>	getFeatures()
String	getIdentifier()
Set<ChemicalEntity>	getReferencedChemicalEntities()
Set<Class<? extends bio.singa.features.model.Feature>>	getRequiredFeatures()
ModuleState	getState()
void	initialize()
void	onCompletion()
void	onReset()
void	reset()
void	setFeature(bio.singa.features.model.Feature<?> feature)
void	setSimulation(Simulation simulation)

Methods inherited from interface java.lang.Runnable

run

Method Detail

getIdentifier

String getIdentifier()

getState

ModuleState getState()

setSimulation

void setSimulation(Simulation simulation)

getReferencedChemicalEntities

Set<ChemicalEntity> getReferencedChemicalEntities()

getRequiredFeatures

Set<Class<? extends bio.singa.features.model.Feature>> getRequiredFeatures()

checkFeatures

void checkFeatures()

setFeature

void setFeature(bio.singa.features.model.Feature<?> feature)

getFeatures

Collection<bio.singa.features.model.Feature<?>> getFeatures()

getEvidence

List<bio.singa.features.model.Evidence> getEvidence()

initialize

void initialize()

reset

void reset()

onReset

void onReset()

onCompletion

void onCompletion()