Uses of Class
bio.singa.simulation.model.graphs.AutomatonNode

Packages that use AutomatonNode

Package	Description
bio.singa.simulation.model.agents.linelike
bio.singa.simulation.model.agents.pointlike
bio.singa.simulation.model.agents.surfacelike
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.concentration.imlementations.reactions
bio.singa.simulation.model.modules.qualitative.implementations
bio.singa.simulation.model.rules

Uses of AutomatonNode in bio.singa.simulation.model.agents.linelike

Methods in bio.singa.simulation.model.agents.linelike that return types with arguments of type AutomatonNode

Modifier and Type	Method	Description
Set<AutomatonNode>	LineLikeAgent.getAssociatedNodes()

Method parameters in bio.singa.simulation.model.agents.linelike with type arguments of type AutomatonNode

Modifier and Type	Method	Description
void	LineLikeAgent.setAssociatedNodes(Set<AutomatonNode> associatedNodes)

Uses of AutomatonNode in bio.singa.simulation.model.agents.pointlike

Methods in bio.singa.simulation.model.agents.pointlike that return types with arguments of type AutomatonNode

Modifier and Type	Method	Description
Map<AutomatonNode,Double>	Vesicle.getAssociatedNodes()

Methods in bio.singa.simulation.model.agents.pointlike with parameters of type AutomatonNode

Modifier and Type	Method	Description
void	Vesicle.addAssociatedNode(AutomatonNode node, double relativeArea)

Uses of AutomatonNode in bio.singa.simulation.model.agents.surfacelike

Methods in bio.singa.simulation.model.agents.surfacelike that return AutomatonNode

Modifier and Type	Method	Description
AutomatonNode	MembraneSegment.getNode()

Methods in bio.singa.simulation.model.agents.surfacelike with parameters of type AutomatonNode

Modifier and Type	Method	Description
void	Membrane.addSegment(AutomatonNode node, bio.singa.mathematics.geometry.edges.LineSegment segment)

Constructors in bio.singa.simulation.model.agents.surfacelike with parameters of type AutomatonNode

Constructor	Description
MembraneSegment(AutomatonNode node, bio.singa.mathematics.geometry.edges.LineSegment segment)

Uses of AutomatonNode in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs that return AutomatonNode

Modifier and Type	Method	Description
AutomatonNode	AutomatonNode.getCopy()
AutomatonNode	AutomatonNode.AreaMapping.getOther(AutomatonNode currentNode)
AutomatonNode	AutomatonNode.AreaMapping.getSource()
AutomatonNode	AutomatonNode.AreaMapping.getTarget()

Methods in bio.singa.simulation.model.graphs that return types with arguments of type AutomatonNode

Modifier and Type	Method	Description
static Set<AutomatonNode>	AutomatonGraphs.circleRegion(AutomatonGraph graph, CellRegion membraneRegion, bio.singa.mathematics.topology.grids.rectangular.RectangularCoordinate centre, int radius)

Methods in bio.singa.simulation.model.graphs with parameters of type AutomatonNode

Modifier and Type	Method	Description
int	AutomatonGraph.addEdgeBetween(int identifier, AutomatonNode source, AutomatonNode target)
int	AutomatonGraph.addEdgeBetween(AutomatonNode source, AutomatonNode target)
AutomatonNode	AutomatonNode.AreaMapping.getOther(AutomatonNode currentNode)
static void	NeighborhoodMappingManager.initializeDiffusiveReduction(AutomatonNode node, bio.singa.mathematics.geometry.model.Polygon area, Ratio reductionRatio)

Constructors in bio.singa.simulation.model.graphs with parameters of type AutomatonNode

Constructor	Description
AreaMapping(AutomatonNode source, AutomatonNode target, CellSubsection subsection, double relativeArea)

Uses of AutomatonNode in bio.singa.simulation.model.modules.concentration.imlementations.reactions

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions that return AutomatonNode

Modifier and Type	Method	Description
AutomatonNode	ReactionEvent.getCurrentNode()

Methods in bio.singa.simulation.model.modules.concentration.imlementations.reactions with parameters of type AutomatonNode

Modifier and Type	Method	Description
void	ReactionEvent.setCurrentNode(AutomatonNode currentNode)

Uses of AutomatonNode in bio.singa.simulation.model.modules.qualitative.implementations

Methods in bio.singa.simulation.model.modules.qualitative.implementations that return AutomatonNode

Modifier and Type	Method	Description
AutomatonNode	EndocytoticPit.getAssociatedNode()

Constructors in bio.singa.simulation.model.modules.qualitative.implementations with parameters of type AutomatonNode

Constructor	Description
EndocytoticPit(AutomatonNode associatedNode)

Uses of AutomatonNode in bio.singa.simulation.model.rules

Methods in bio.singa.simulation.model.rules with parameters of type AutomatonNode

Modifier and Type	Method	Description
void	AssignmentRule.applyRule(AutomatonNode node)