Package bio.singa.simulation.model.concentrations

Class InitialConcentration

java.lang.Object

bio.singa.features.model.AbstractFeature<javax.measure.Quantity<FeatureContent>>

bio.singa.features.model.AbstractQuantitativeFeature<bio.singa.features.quantities.MolarConcentration>

bio.singa.simulation.model.concentrations.InitialConcentration

All Implemented Interfaces:

bio.singa.features.model.Feature<javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration>>, bio.singa.features.model.QuantitativeFeature<bio.singa.features.quantities.MolarConcentration>

public class InitialConcentration
extends bio.singa.features.model.AbstractQuantitativeFeature<bio.singa.features.quantities.MolarConcentration>

Author:

cl

Nested Class Summary

Nested classes/interfaces inherited from class bio.singa.features.model.AbstractFeature

bio.singa.features.model.AbstractFeature.Builder<FeatureContent extends Object,TopLevelType extends bio.singa.features.model.Feature<FeatureContent>,BuilderType extends bio.singa.features.model.AbstractFeature.Builder>

Field Summary

Fields inherited from class bio.singa.features.model.AbstractFeature

baseContent, featureContent

Constructor Summary

Constructors

Constructor	Description
InitialConcentration()
InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity)
InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity, bio.singa.features.model.Evidence evidence)
InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity, List<bio.singa.features.model.Evidence> evidence)

Method Summary

Modifier and Type	Method	Description
void	addCondition(ConcentrationCondition condition)
void	apply(Simulation simulation)
void	apply(Updatable updatable)
javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration>	getConcentration()
TreeMap<Integer,ConcentrationCondition>	getConditions()
ChemicalEntity	getEntity()
String	getLocation()
CellSubsection	getSubsection()
CellTopology	getTopology()
boolean	isFix()
void	setConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> concentration)
void	setConditions(TreeMap<Integer,ConcentrationCondition> conditions)
void	setEntity(ChemicalEntity entity)
void	setFix(boolean fix)
void	setSubsection(CellSubsection subsection)
void	setTopology(CellTopology topology)
boolean	test(Updatable updatable)
String	toString()

Methods inherited from class bio.singa.features.model.AbstractQuantitativeFeature

addAlternativeValue, setAlternativeContent

Methods inherited from class bio.singa.features.model.AbstractFeature

addAlternativeContent, addEvidence, equals, getAllEvidence, getAlternativeContents, getComment, getContent, getDescriptor, getIdentifier, getPrimaryEvidence, hashCode, setAlternativeContents, setComment, setIdentifier

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface bio.singa.features.model.Feature

addAlternativeContent, addEvidence, getAllEvidence, getAlternativeContents, getComment, getContent, getDescriptor, getIdentifier, getPrimaryEvidence, setComment, setIdentifier

Constructor Detail

InitialConcentration

public InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity,
                            List<bio.singa.features.model.Evidence> evidence)

InitialConcentration

public InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity,
                            bio.singa.features.model.Evidence evidence)

InitialConcentration

public InitialConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> quantity)

InitialConcentration

public InitialConcentration()

Method Detail

getSubsection

public CellSubsection getSubsection()

setSubsection

public void setSubsection(CellSubsection subsection)

getTopology

public CellTopology getTopology()

setTopology

public void setTopology(CellTopology topology)

getLocation

public String getLocation()

getConditions

public TreeMap<Integer,ConcentrationCondition> getConditions()

setConditions

public void setConditions(TreeMap<Integer,ConcentrationCondition> conditions)

getEntity

public ChemicalEntity getEntity()

setEntity

public void setEntity(ChemicalEntity entity)

getConcentration

public javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> getConcentration()

setConcentration

public void setConcentration(javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration> concentration)

isFix

public boolean isFix()

setFix

public void setFix(boolean fix)

addCondition

public void addCondition(ConcentrationCondition condition)

test

public boolean test(Updatable updatable)

apply

public void apply(Simulation simulation)

apply

public void apply(Updatable updatable)

toString

public String toString()

Overrides:

toString in class bio.singa.features.model.AbstractFeature<javax.measure.Quantity<bio.singa.features.quantities.MolarConcentration>>