Package bio.singa.simulation.model.agents.linelike

Class LineLikeAgentLayer

java.lang.Object

bio.singa.simulation.model.agents.linelike.LineLikeAgentLayer

public class LineLikeAgentLayer
extends Object

Author:

cl

Constructor Summary

Constructors

Constructor	Description
LineLikeAgentLayer(Simulation simulation, MembraneLayer membraneLayer)

Method Summary

Modifier and Type	Method	Description
void	addActin(bio.singa.mathematics.vectors.Vector2D initialPosition, bio.singa.mathematics.vectors.Vector2D initialDirection)
void	addFilament(LineLikeAgent filament)
void	addFilaments(Collection<LineLikeAgent> filaments)
void	addMicrotubule(bio.singa.mathematics.vectors.Vector2D initialPosition, bio.singa.mathematics.vectors.Vector2D initialDirection)
int	clearMisguidedFilamens()
bio.singa.core.utility.Pair<bio.singa.mathematics.vectors.Vector2D>	determineSpawnPosition(Membrane sourceMembrane, Membrane targetMembrane)
List<LineLikeAgent>	getFilaments()
CellRegion	getTargetMembrane()
boolean	hasGrowingFilaments()
void	initializeMembraneToMembraneMicrotubules(Membrane sourceMembrane, Membrane targetedMembrane, int numberOfFilaments)
boolean	isTargetedGrowth()
void	nextEpoch()
void	purgeMisguidedFilaments()
void	setFilaments(List<LineLikeAgent> filaments)
void	setTargetedGrowth(boolean targetedGrowth)
void	setTargetMembrane(CellRegion targetMembrane)
void	spawnActinFilament(Membrane cellMembrane)
void	spawnHorizontalFilament(Membrane sourceMembrane)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LineLikeAgentLayer

public LineLikeAgentLayer(Simulation simulation,
                          MembraneLayer membraneLayer)

Method Detail

isTargetedGrowth

public boolean isTargetedGrowth()

setTargetedGrowth

public void setTargetedGrowth(boolean targetedGrowth)

getTargetMembrane

public CellRegion getTargetMembrane()

setTargetMembrane

public void setTargetMembrane(CellRegion targetMembrane)

initializeMembraneToMembraneMicrotubules

public void initializeMembraneToMembraneMicrotubules(Membrane sourceMembrane,
                                                     Membrane targetedMembrane,
                                                     int numberOfFilaments)

determineSpawnPosition

public bio.singa.core.utility.Pair<bio.singa.mathematics.vectors.Vector2D> determineSpawnPosition(Membrane sourceMembrane,
                                                                                                  Membrane targetMembrane)

spawnActinFilament

public void spawnActinFilament(Membrane cellMembrane)

spawnHorizontalFilament

public void spawnHorizontalFilament(Membrane sourceMembrane)

nextEpoch

public void nextEpoch()

hasGrowingFilaments

public boolean hasGrowingFilaments()

addFilaments

public void addFilaments(Collection<LineLikeAgent> filaments)

addMicrotubule

public void addMicrotubule(bio.singa.mathematics.vectors.Vector2D initialPosition,
                           bio.singa.mathematics.vectors.Vector2D initialDirection)

addActin

public void addActin(bio.singa.mathematics.vectors.Vector2D initialPosition,
                     bio.singa.mathematics.vectors.Vector2D initialDirection)

purgeMisguidedFilaments

public void purgeMisguidedFilaments()

clearMisguidedFilamens

public int clearMisguidedFilamens()

getFilaments

public List<LineLikeAgent> getFilaments()

setFilaments

public void setFilaments(List<LineLikeAgent> filaments)

addFilament

public void addFilament(LineLikeAgent filament)