Package bio.singa.simulation.entities

Class SimpleEntity

java.lang.Object

bio.singa.simulation.entities.SimpleEntity

All Implemented Interfaces:

bio.singa.features.model.Featureable, ChemicalEntity

public class SimpleEntity
extends Object
implements ChemicalEntity

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	SimpleEntity.SimpleEntityBuilder

Field Summary

Fields

Modifier and Type	Field	Description
static Set<Class<? extends bio.singa.features.model.Feature>>	availableFeatures

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SimpleEntity(String identifier)	Creates a new chemical entity with the given identifier.

Method Summary

Modifier and Type	Method	Description
void	addAdditionalIdentifier(bio.singa.features.identifiers.model.Identifier identifier)
void	addAdditionalIdentifiers(Collection<bio.singa.features.identifiers.model.Identifier> identifiers)
static SimpleEntity.SimpleEntityBuilder	create(String identifier)
boolean	equals(Object o)
List<bio.singa.features.identifiers.model.Identifier>	getAllIdentifiers()
Set<Class<? extends bio.singa.features.model.Feature>>	getAvailableFeatures()
<FeatureType extends bio.singa.features.model.Feature> FeatureType	getFeature(Class<FeatureType> featureTypeClass)
Collection<bio.singa.features.model.Feature<?>>	getFeatures()
String	getIdentifier()
<FeatureType extends bio.singa.features.model.Feature> boolean	hasFeature(Class<FeatureType> featureTypeClass)
int	hashCode()
boolean	isMembraneBound()
boolean	isSmall()
<FeatureType extends bio.singa.features.model.Feature> void	setFeature(FeatureType feature)
<FeatureType extends bio.singa.features.model.Feature> void	setFeature(Class<FeatureType> featureTypeClass)
void	setMembraneBound(boolean membraneBound)
void	setSmall(boolean small)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface bio.singa.features.model.Featureable

canBeFeaturedWith, meetsAllRequirements

Field Detail

availableFeatures

public static final Set<Class<? extends bio.singa.features.model.Feature>> availableFeatures

Constructor Detail

SimpleEntity

protected SimpleEntity(String identifier)

Creates a new chemical entity with the given identifier.

Parameters:

identifier - The identifier.

Method Detail

create

public static SimpleEntity.SimpleEntityBuilder create(String identifier)

getIdentifier

public String getIdentifier()

Specified by:

getIdentifier in interface ChemicalEntity

isMembraneBound

public boolean isMembraneBound()

Specified by:

isMembraneBound in interface ChemicalEntity

setMembraneBound

public void setMembraneBound(boolean membraneBound)

Specified by:

setMembraneBound in interface ChemicalEntity

isSmall

public boolean isSmall()

Specified by:

isSmall in interface ChemicalEntity

setSmall

public void setSmall(boolean small)

addAdditionalIdentifiers

public void addAdditionalIdentifiers(Collection<bio.singa.features.identifiers.model.Identifier> identifiers)

addAdditionalIdentifier

public void addAdditionalIdentifier(bio.singa.features.identifiers.model.Identifier identifier)

getAllIdentifiers

public List<bio.singa.features.identifiers.model.Identifier> getAllIdentifiers()

Specified by:

getAllIdentifiers in interface ChemicalEntity

getFeatures

public Collection<bio.singa.features.model.Feature<?>> getFeatures()

Specified by:

getFeatures in interface bio.singa.features.model.Featureable

getFeature

public <FeatureType extends bio.singa.features.model.Feature> FeatureType getFeature(Class<FeatureType> featureTypeClass)

Specified by:

getFeature in interface bio.singa.features.model.Featureable

setFeature

public <FeatureType extends bio.singa.features.model.Feature> void setFeature(Class<FeatureType> featureTypeClass)

Specified by:

setFeature in interface bio.singa.features.model.Featureable

setFeature

public <FeatureType extends bio.singa.features.model.Feature> void setFeature(FeatureType feature)

Specified by:

setFeature in interface bio.singa.features.model.Featureable

hasFeature

public <FeatureType extends bio.singa.features.model.Feature> boolean hasFeature(Class<FeatureType> featureTypeClass)

Specified by:

hasFeature in interface bio.singa.features.model.Featureable

getAvailableFeatures

public Set<Class<? extends bio.singa.features.model.Feature>> getAvailableFeatures()

Specified by:

getAvailableFeatures in interface bio.singa.features.model.Featureable

toString

public String toString()

Overrides:

toString in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object