Package bio.singa.simulation.entities

Class GraphComplexNode

java.lang.Object

bio.singa.mathematics.graphs.model.AbstractNode<GraphComplexNode,bio.singa.mathematics.vectors.Vector2D,Integer>

bio.singa.simulation.entities.GraphComplexNode

All Implemented Interfaces:

bio.singa.mathematics.graphs.model.Node<GraphComplexNode,bio.singa.mathematics.vectors.Vector2D,Integer>

public class GraphComplexNode
extends bio.singa.mathematics.graphs.model.AbstractNode<GraphComplexNode,bio.singa.mathematics.vectors.Vector2D,Integer>

Author:

cl

Constructor Summary

Constructors

Constructor	Description
GraphComplexNode(Integer identifier)
GraphComplexNode(Integer identifier, bio.singa.mathematics.vectors.Vector2D position)

Method Summary

Modifier and Type	Method	Description
void	addBindingSite(BindingSite bindingSite)
List<BindingSite>	getBindingSites()
GraphComplexNode	getCopy()
ChemicalEntity	getEntity()
boolean	hasBindingSite(BindingSite bindingSite)
boolean	isEntity(ChemicalEntity entity)
void	setBindingSites(List<BindingSite> bindingSites)
void	setEntity(ChemicalEntity entity)
String	toString()

Methods inherited from class bio.singa.mathematics.graphs.model.AbstractNode

addNeighbour, equals, getDegree, getIdentifier, getNeighbours, getPosition, getSpatialPosition, hashCode, hasNeighbour, removeNeighbour, setIdentifier, setNeighbours, setPosition, setSpatialPosition

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

GraphComplexNode

public GraphComplexNode(Integer identifier)

GraphComplexNode

public GraphComplexNode(Integer identifier,
                        bio.singa.mathematics.vectors.Vector2D position)

Method Detail

getEntity

public ChemicalEntity getEntity()

setEntity

public void setEntity(ChemicalEntity entity)

isEntity

public boolean isEntity(ChemicalEntity entity)

getBindingSites

public List<BindingSite> getBindingSites()

setBindingSites

public void setBindingSites(List<BindingSite> bindingSites)

addBindingSite

public void addBindingSite(BindingSite bindingSite)

hasBindingSite

public boolean hasBindingSite(BindingSite bindingSite)

getCopy

public GraphComplexNode getCopy()

toString

public String toString()

Overrides:

toString in class bio.singa.mathematics.graphs.model.AbstractNode<GraphComplexNode,bio.singa.mathematics.vectors.Vector2D,Integer>