bio.singa.simulation.model.modules.qualitative.implementations

Class ClathrinMediatedEndocytosis

java.lang.Object

bio.singa.simulation.model.modules.qualitative.QualitativeModule

bio.singa.simulation.model.modules.qualitative.implementations.ClathrinMediatedEndocytosis

All Implemented Interfaces:

UpdateModule, Runnable

public class ClathrinMediatedEndocytosis
extends QualitativeModule

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ClathrinMediatedEndocytosis.Pit

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
ClathrinMediatedEndocytosis()

Method Summary

Modifier and Type	Method and Description
void	calculateUpdates()
List<ClathrinMediatedEndocytosis.Pit>	getAspiringPits()
void	initialize()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()
void	setMembraneRegion(CellRegion region)

Methods inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

checkFeatures, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getSimulation, getState, resetState, run, setFeature, setIdentifier, setSimulation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ClathrinMediatedEndocytosis

public ClathrinMediatedEndocytosis()

Method Detail

initialize

public void initialize()

Specified by:

initialize in interface UpdateModule

Overrides:

initialize in class QualitativeModule

setMembraneRegion

public void setMembraneRegion(CellRegion region)

calculateUpdates

public void calculateUpdates()

optimizeTimeStep

public void optimizeTimeStep()

onReset

public void onReset()

onCompletion

public void onCompletion()

getAspiringPits

public List<ClathrinMediatedEndocytosis.Pit> getAspiringPits()