bio.singa.simulation.model.modules.concentration.specifity

Class EntitySpecific

java.lang.Object

bio.singa.simulation.model.modules.concentration.specifity.EntitySpecific

All Implemented Interfaces:

UpdateSpecificity<EntityDeltaFunction>

public class EntitySpecific
extends Object
implements UpdateSpecificity<EntityDeltaFunction>

Entity specific ConcentrationBasedModules calculate their AbstractDeltaFunction for every chemical entity and every subsection of an updatable.

Author:

cl

Constructor Summary

Constructors

Constructor and Description
EntitySpecific(ConcentrationBasedModule<EntityDeltaFunction> module) Initializes the update specificity for the corresponding module.

Method Summary

Modifier and Type	Method and Description
void	addDeltaFunction(EntityDeltaFunction entityDeltaFunction) Adds the implementation of a AbstractDeltaFunction to be calculated during simulation.
void	determineDeltas(ConcentrationContainer container) Determines all deltas for a Concentration container.
void	processContainer(ConcentrationContainer container) Processes a concentration container.
void	processContainer(ConcentrationContainer container, CellSubsection subsection, ChemicalEntity chemicalEntity)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EntitySpecific

public EntitySpecific(ConcentrationBasedModule<EntityDeltaFunction> module)

Initializes the update specificity for the corresponding module.

Parameters:

module - The module.

Method Detail

processContainer

public void processContainer(ConcentrationContainer container)

Description copied from interface: UpdateSpecificity

Processes a concentration container.

Specified by:

processContainer in interface UpdateSpecificity<EntityDeltaFunction>

Parameters:

container - The container.

processContainer

public void processContainer(ConcentrationContainer container,
                             CellSubsection subsection,
                             ChemicalEntity chemicalEntity)

Specified by:

processContainer in interface UpdateSpecificity<EntityDeltaFunction>

determineDeltas

public void determineDeltas(ConcentrationContainer container)

Description copied from interface: UpdateSpecificity

Determines all deltas for a Concentration container.

Specified by:

determineDeltas in interface UpdateSpecificity<EntityDeltaFunction>

Parameters:

container - The container.

addDeltaFunction

public void addDeltaFunction(EntityDeltaFunction entityDeltaFunction)

Description copied from interface: UpdateSpecificity

Adds the implementation of a AbstractDeltaFunction to be calculated during simulation.

Specified by:

addDeltaFunction in interface UpdateSpecificity<EntityDeltaFunction>

Parameters:

entityDeltaFunction - The delta function.