bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants

Class DynamicReactantBehavior

java.lang.Object

bio.singa.simulation.model.modules.concentration.imlementations.reactions.behaviors.reactants.DynamicReactantBehavior

All Implemented Interfaces:

ReactantBehavior

public class DynamicReactantBehavior
extends Object
implements ReactantBehavior

Author:

cl

Constructor Summary

Constructors

Constructor and Description
DynamicReactantBehavior()

Method Summary

Modifier and Type	Method and Description
void	addDynamicProduct(String dynamicSubstrate, ComplexModification modification)
void	addDynamicProduct(String dynamicSubstrate, List<ComplexModification> modifications)
void	addDynamicSubstrate(DynamicChemicalEntity dynamicSubstrate)
void	addReactant(Reactant reactant)
void	addStaticCatalyst(Reactant catalyst)
void	addStaticProduct(Reactant product)
void	addStaticSubstrate(Reactant substrate)
void	addTargetTopology(ChemicalEntity splitTargetEntity, CellTopology targetTopology)
List<ReactantSet>	generateReactantSets(Updatable updatable)
List<Reactant>	getCatalysts()
Map<String,List<ComplexModification>>	getDynamicProducts()
List<DynamicChemicalEntity>	getDynamicSubstrates()
List<Reactant>	getProducts()
List<ChemicalEntity>	getReferencedEntities()
List<Reactant>	getSubstrates()
Map<ChemicalEntity,CellTopology>	getTargetTopologies()
boolean	isDynamicComplex()
void	setDynamicComplex(boolean dynamicComplex)
void	setDynamicSubstrates(List<DynamicChemicalEntity> dynamicSubstrates)
void	setStaticCatalysts(List<Reactant> staticCatalysts)
void	setStaticProducts(List<Reactant> staticProducts)
void	setStaticSubstrates(List<Reactant> staticSubstrates)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DynamicReactantBehavior

public DynamicReactantBehavior()

Method Detail

getSubstrates

public List<Reactant> getSubstrates()

Specified by:

getSubstrates in interface ReactantBehavior

setStaticSubstrates

public void setStaticSubstrates(List<Reactant> staticSubstrates)

addStaticSubstrate

public void addStaticSubstrate(Reactant substrate)

getProducts

public List<Reactant> getProducts()

Specified by:

getProducts in interface ReactantBehavior

setStaticProducts

public void setStaticProducts(List<Reactant> staticProducts)

addStaticProduct

public void addStaticProduct(Reactant product)

getCatalysts

public List<Reactant> getCatalysts()

Specified by:

getCatalysts in interface ReactantBehavior

setStaticCatalysts

public void setStaticCatalysts(List<Reactant> staticCatalysts)

addStaticCatalyst

public void addStaticCatalyst(Reactant catalyst)

getDynamicSubstrates

public List<DynamicChemicalEntity> getDynamicSubstrates()

addDynamicSubstrate

public void addDynamicSubstrate(DynamicChemicalEntity dynamicSubstrate)

setDynamicSubstrates

public void setDynamicSubstrates(List<DynamicChemicalEntity> dynamicSubstrates)

isDynamicComplex

public boolean isDynamicComplex()

setDynamicComplex

public void setDynamicComplex(boolean dynamicComplex)

getDynamicProducts

public Map<String,List<ComplexModification>> getDynamicProducts()

addDynamicProduct

public void addDynamicProduct(String dynamicSubstrate,
                              ComplexModification modification)

addDynamicProduct

public void addDynamicProduct(String dynamicSubstrate,
                              List<ComplexModification> modifications)

addTargetTopology

public void addTargetTopology(ChemicalEntity splitTargetEntity,
                              CellTopology targetTopology)

getTargetTopologies

public Map<ChemicalEntity,CellTopology> getTargetTopologies()

addReactant

public void addReactant(Reactant reactant)

Specified by:

addReactant in interface ReactantBehavior

generateReactantSets

public List<ReactantSet> generateReactantSets(Updatable updatable)

Specified by:

generateReactantSets in interface ReactantBehavior

getReferencedEntities

public List<ChemicalEntity> getReferencedEntities()

Specified by:

getReferencedEntities in interface ReactantBehavior