bio.singa.simulation.model.modules.concentration.imlementations.reactions

Interface ReactionBuilder.DynamicReactantStep

All Known Implementing Classes:

ReactionBuilder.DynamicBuilder

Enclosing class:

ReactionBuilder

public static interface ReactionBuilder.DynamicReactantStep

Method Summary

Modifier and Type	Method and Description
ReactionBuilder.DynamicReactantStep	addCatalyst(ChemicalEntity chemicalEntity)
ReactionBuilder.DynamicReactantStep	addCatalyst(ChemicalEntity chemicalEntity, CellTopology topology)
ReactionBuilder.DynamicReactantStep	addProduct(ChemicalEntity chemicalEntity)
ReactionBuilder.DynamicReactantStep	addProduct(ChemicalEntity chemicalEntity, CellTopology topology)
ReactionBuilder.DynamicReactantStep	addProduct(ChemicalEntity chemicalEntity, CellTopology topology, double stoichiometricNumber)
ReactionBuilder.DynamicReactantStep	addProduct(ChemicalEntity chemicalEntity, double stoichiometricNumber)
ReactionBuilder.DynamicReactantStep	addProduct(DynamicChemicalEntity referenceEntity, ComplexModification modification)
ReactionBuilder.DynamicReactantStep	addSubstrate(ChemicalEntity chemicalEntity)
ReactionBuilder.DynamicReactantStep	addSubstrate(ChemicalEntity chemicalEntity, CellTopology topology)
ReactionBuilder.DynamicReactantStep	addSubstrate(ChemicalEntity chemicalEntity, CellTopology topology, double stoichiometricNumber)
ReactionBuilder.DynamicReactantStep	addSubstrate(ChemicalEntity chemicalEntity, double stoichiometricNumber)
ReactionBuilder.DynamicReactantStep	addSubstrate(DynamicChemicalEntity dynamicChemicalEntity)
ReactionBuilder.ComplexBuildingReactionStep	complexBuilding()
ReactionBuilder.IrreversibleReactionStep	irreversible()
ReactionBuilder.ParameterStep	kineticLaw(String expression)
ReactionBuilder.MichaelisMentenReactionStep	michaelisMenten()
ReactionBuilder.ReversibleReactionStep	reversible()
ReactionBuilder.DynamicReactantStep	targetProductToTopology(ChemicalEntity affectedEntity, CellTopology targetTopology)

Method Detail

addSubstrate

ReactionBuilder.DynamicReactantStep addSubstrate(DynamicChemicalEntity dynamicChemicalEntity)

addSubstrate

ReactionBuilder.DynamicReactantStep addSubstrate(ChemicalEntity chemicalEntity)

addSubstrate

ReactionBuilder.DynamicReactantStep addSubstrate(ChemicalEntity chemicalEntity,
                                                 CellTopology topology)

addSubstrate

ReactionBuilder.DynamicReactantStep addSubstrate(ChemicalEntity chemicalEntity,
                                                 double stoichiometricNumber)

addSubstrate

ReactionBuilder.DynamicReactantStep addSubstrate(ChemicalEntity chemicalEntity,
                                                 CellTopology topology,
                                                 double stoichiometricNumber)

addProduct

ReactionBuilder.DynamicReactantStep addProduct(DynamicChemicalEntity referenceEntity,
                                               ComplexModification modification)

targetProductToTopology

ReactionBuilder.DynamicReactantStep targetProductToTopology(ChemicalEntity affectedEntity,
                                                            CellTopology targetTopology)

addProduct

ReactionBuilder.DynamicReactantStep addProduct(ChemicalEntity chemicalEntity)

addProduct

ReactionBuilder.DynamicReactantStep addProduct(ChemicalEntity chemicalEntity,
                                               CellTopology topology)

addProduct

ReactionBuilder.DynamicReactantStep addProduct(ChemicalEntity chemicalEntity,
                                               double stoichiometricNumber)

addProduct

ReactionBuilder.DynamicReactantStep addProduct(ChemicalEntity chemicalEntity,
                                               CellTopology topology,
                                               double stoichiometricNumber)

addCatalyst

ReactionBuilder.DynamicReactantStep addCatalyst(ChemicalEntity chemicalEntity)

addCatalyst

ReactionBuilder.DynamicReactantStep addCatalyst(ChemicalEntity chemicalEntity,
                                                CellTopology topology)

reversible

ReactionBuilder.ReversibleReactionStep reversible()

irreversible

ReactionBuilder.IrreversibleReactionStep irreversible()

complexBuilding

ReactionBuilder.ComplexBuildingReactionStep complexBuilding()

michaelisMenten

ReactionBuilder.MichaelisMentenReactionStep michaelisMenten()

kineticLaw

ReactionBuilder.ParameterStep kineticLaw(String expression)