| Modifier and Type | Interface and Description |
|---|---|
interface |
ModuleBuilder<ModuleType extends ConcentrationBasedModule> |
| Modifier and Type | Method and Description |
|---|---|
static <ModuleImplementation extends ConcentrationBasedModule> |
ModuleFactory.setupModule(Class<ModuleImplementation> moduleCLass,
ModuleFactory.Scope scope,
ModuleFactory.Specificity specificity)
Creates a new module with the specified setup.
|
| Modifier and Type | Class and Description |
|---|---|
class |
Reaction |
| Modifier and Type | Class and Description |
|---|---|
class |
Diffusion
Diffusion is the fundamental force governing the random movement of molecules in cells.
|
class |
MembraneDiffusion
The membrane diffusion module describes the movement of chemical entities across
Membranes driven by the
MembranePermeability of the cargo. |
class |
SingleFileChannelMembraneTransport
The single file channel transport describes the movement of cargo molecules through
Transporter proteins, so
called membrane channels. |
| Constructor and Description |
|---|
DependentUpdate(ConcentrationBasedModule<?> module)
Initializes the update scope for the corresponding module.
|
IndependentUpdate(ConcentrationBasedModule module)
Initializes the update scope for the corresponding module.
|
SemiDependentUpdate(ConcentrationBasedModule module)
Initializes the update scope for the corresponding module.
|
| Constructor and Description |
|---|
EntitySpecific(ConcentrationBasedModule<EntityDeltaFunction> module)
Initializes the update specificity for the corresponding module.
|
SectionSpecific(ConcentrationBasedModule module)
Initializes the update specificity for the corresponding module.
|
UpdatableSpecific(ConcentrationBasedModule module)
Initializes the update specificity for the corresponding module.
|
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