| Package | Description |
|---|---|
| bio.singa.simulation.model.agents.linelike | |
| bio.singa.simulation.model.agents.surfacelike | |
| bio.singa.simulation.model.agents.volumelike |
| Modifier and Type | Method and Description |
|---|---|
void |
LineLikeAgentLayer.spawnActinFilament(Membrane cellMembrane) |
void |
LineLikeAgentLayer.spawnFilament(Membrane sourceMembrane,
Membrane targetMembrane) |
void |
LineLikeAgentLayer.spawnHorizontalFilament(Membrane sourceMembrane) |
| Modifier and Type | Method and Description |
|---|---|
static Membrane |
MembraneFactory.createClosedMembrane(Collection<bio.singa.mathematics.vectors.Vector2D> vectors,
CellRegion innerRegion,
CellRegion membraneRegion,
AutomatonGraph graph,
Map<bio.singa.mathematics.vectors.Vector2D,CellRegion> regions) |
static Membrane |
MembraneFactory.createLinearMembrane(Collection<bio.singa.mathematics.vectors.Vector2D> vectors,
CellRegion innerRegion,
CellRegion membraneRegion,
bio.singa.mathematics.topology.grids.rectangular.NeumannRectangularDirection innerDirection,
AutomatonGraph graph,
Map<bio.singa.mathematics.vectors.Vector2D,CellRegion> regions,
bio.singa.mathematics.geometry.faces.Rectangle globalClipper) |
| Modifier and Type | Method and Description |
|---|---|
List<Membrane> |
MembraneLayer.getMembranes() |
static List<Membrane> |
MembraneTracer.regionsToMembrane(AutomatonGraph graph) |
| Modifier and Type | Method and Description |
|---|---|
void |
MembraneLayer.addMembrane(Membrane membrane) |
| Modifier and Type | Method and Description |
|---|---|
void |
MembraneLayer.addMembranes(Collection<Membrane> membranes) |
| Modifier and Type | Method and Description |
|---|---|
static VolumeLikeAgent |
VolumeLikeAgentFactory.createCellCortex(Membrane cellMembrane,
bio.singa.mathematics.topology.grids.rectangular.MooreRectangularDirection innerDirection,
javax.measure.Quantity<javax.measure.quantity.Length> width,
javax.measure.Quantity<javax.measure.quantity.Length> distance) |
static VolumeLikeAgent |
VolumeLikeAgentFactory.createCellCortex(Membrane cellMembrane,
javax.measure.Quantity<javax.measure.quantity.Length> width,
javax.measure.Quantity<javax.measure.quantity.Length> distance) |
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