bio.singa.simulation.export.reactiongraph

Class ReactionGraph

java.lang.Object

bio.singa.mathematics.graphs.model.AbstractMapGraph<NodeType,EdgeType,bio.singa.mathematics.vectors.Vector2D,Integer>

bio.singa.mathematics.graphs.model.DirectedWeightedGraph<ReactionGraphNode,ReactionGraphEdge>

bio.singa.simulation.export.reactiongraph.ReactionGraph

All Implemented Interfaces:

bio.singa.mathematics.graphs.model.Graph<ReactionGraphNode,ReactionGraphEdge,Integer>

public class ReactionGraph
extends bio.singa.mathematics.graphs.model.DirectedWeightedGraph<ReactionGraphNode,ReactionGraphEdge>

Author:

cl

Field Summary

Fields inherited from class bio.singa.mathematics.graphs.model.AbstractMapGraph

edges

Constructor Summary

Constructors

Constructor and Description
ReactionGraph()

Method Summary

Modifier and Type	Method and Description
int	addEdgeBetween(int identifier, ReactionGraphNode source, ReactionGraphNode target)
int	addEdgeBetween(ReactionGraphNode source, ReactionGraphNode target)
ReactionGraphNode	addNode(ChemicalEntity entity)
Optional<ReactionGraphNode>	getNodeWithContent(ChemicalEntity content)

Methods inherited from class bio.singa.mathematics.graphs.model.DirectedWeightedGraph

nextNodeIdentifier

Methods inherited from class bio.singa.mathematics.graphs.model.AbstractMapGraph

addEdgeBetween, addNode, containsEdge, containsNode, getEdge, getEdges, getMaximumDegree, getNode, getNodes, nextEdgeIdentifier, removeEdge, removeEdge, removeNode, removeNode, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface bio.singa.mathematics.graphs.model.Graph

getCopy, getEdgeBetween, getTouchingNodes

Constructor Detail

ReactionGraph

public ReactionGraph()

Method Detail

getNodeWithContent

public Optional<ReactionGraphNode> getNodeWithContent(ChemicalEntity content)

addNode

public ReactionGraphNode addNode(ChemicalEntity entity)

addEdgeBetween

public int addEdgeBetween(int identifier,
                          ReactionGraphNode source,
                          ReactionGraphNode target)

Specified by:

addEdgeBetween in interface bio.singa.mathematics.graphs.model.Graph<ReactionGraphNode,ReactionGraphEdge,Integer>

Specified by:

addEdgeBetween in class bio.singa.mathematics.graphs.model.AbstractMapGraph<ReactionGraphNode,ReactionGraphEdge,bio.singa.mathematics.vectors.Vector2D,Integer>

addEdgeBetween

public int addEdgeBetween(ReactionGraphNode source,
                          ReactionGraphNode target)

Specified by:

addEdgeBetween in interface bio.singa.mathematics.graphs.model.Graph<ReactionGraphNode,ReactionGraphEdge,Integer>

Specified by:

addEdgeBetween in class bio.singa.mathematics.graphs.model.AbstractMapGraph<ReactionGraphNode,ReactionGraphEdge,bio.singa.mathematics.vectors.Vector2D,Integer>