bio.singa.simulation.model.modules.qualitative.implementations

Class ClathrinMediatedEndocytosis

java.lang.Object

bio.singa.simulation.model.modules.qualitative.QualitativeModule

bio.singa.simulation.model.modules.qualitative.implementations.ClathrinMediatedEndocytosis

All Implemented Interfaces:

UpdateModule

public class ClathrinMediatedEndocytosis
extends QualitativeModule

Author:

cl

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	ClathrinMediatedEndocytosis.Pit

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
ClathrinMediatedEndocytosis()

Method Summary

Modifier and Type	Method and Description
void	addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea, double numberOfEntities, ChemicalEntity chemicalEntity)
void	calculateUpdates()
List<ClathrinMediatedEndocytosis.Pit>	getAspiringPits()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()
void	setMembraneRegion(CellRegion region)
String	toString()

Methods inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

checkFeatures, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getState, resetState, scaleScalableFeatures, setFeature, setIdentifier, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ClathrinMediatedEndocytosis

public ClathrinMediatedEndocytosis()

Method Detail

calculateUpdates

public void calculateUpdates()

optimizeTimeStep

public void optimizeTimeStep()

onReset

public void onReset()

onCompletion

public void onCompletion()

setMembraneRegion

public void setMembraneRegion(CellRegion region)

addMembraneCargo

public void addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea,
                             double numberOfEntities,
                             ChemicalEntity chemicalEntity)

getAspiringPits

public List<ClathrinMediatedEndocytosis.Pit> getAspiringPits()

toString

public String toString()

Overrides:

toString in class Object