bio.singa.simulation.model.modules.displacement.implementations

Class VesicleConfinedDiffusion

java.lang.Object

bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

bio.singa.simulation.model.modules.displacement.implementations.VesicleConfinedDiffusion

All Implemented Interfaces:

UpdateModule

public class VesicleConfinedDiffusion
extends DisplacementBasedModule

Author:

cl

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
VesicleConfinedDiffusion(VesicleStateRegistry.VesicleState confiningState, VolumeLikeAgent confinedVolume)

Method Summary

Modifier and Type	Method and Description
DisplacementDelta	calculateDisplacement(Vesicle vesicle)
VolumeLikeAgent	getConfinedVolume()
VesicleStateRegistry.VesicleState	getConfiningState()

Methods inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

addDeltaFunction, calculateUpdates, checkFeatures, determineDeltas, evaluateModuleState, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getScaledFeature, getState, onCompletion, onReset, optimizeTimeStep, processAllVesicles, resetState, scaleScalableFeatures, setFeature, setIdentifier, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VesicleConfinedDiffusion

public VesicleConfinedDiffusion(VesicleStateRegistry.VesicleState confiningState,
                                VolumeLikeAgent confinedVolume)

Method Detail

calculateDisplacement

public DisplacementDelta calculateDisplacement(Vesicle vesicle)

getConfiningState

public VesicleStateRegistry.VesicleState getConfiningState()

getConfinedVolume

public VolumeLikeAgent getConfinedVolume()