bio.singa.simulation.model.modules.concentration.imlementations

Class Reaction.Builder<TopLevelType extends Reaction,BuilderType extends Reaction.Builder>

java.lang.Object

bio.singa.simulation.model.modules.concentration.imlementations.Reaction.Builder<TopLevelType,BuilderType>

All Implemented Interfaces:

ModuleBuilder

Direct Known Subclasses:

MichaelisMentenReaction.MichaelisMentenReactionBuilder, NthOrderReaction.NthOrderReactionBuilder, ReversibleReaction.ReversibleReactionBuilder

Enclosing class:

Reaction

public abstract static class Reaction.Builder<TopLevelType extends Reaction,BuilderType extends Reaction.Builder>
extends Object
implements ModuleBuilder

Constructor Summary

Constructors

Constructor and Description
Builder(Simulation simulation)

Method Summary

Modifier and Type	Method and Description
BuilderType	addProduct(ChemicalEntity chemicalEntity)
BuilderType	addProduct(ChemicalEntity chemicalEntity, CellTopology topology)
BuilderType	addProduct(ChemicalEntity chemicalEntity, double stoichiometricNumber)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, CellTopology topology)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, CellTopology topology, double stoichiometricNumber)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, double stoichiometricNumber)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, double stoichiometricNumber, double reactionOrder)
TopLevelType	build()
TopLevelType	createModule(Simulation simulation)
protected abstract TopLevelType	createObject(Simulation primaryIdentifer)
protected abstract BuilderType	getBuilder()
TopLevelType	getModule()
BuilderType	identifier(String identifier)
BuilderType	setNonElementary()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Builder

public Builder(Simulation simulation)

Method Detail

createObject

protected abstract TopLevelType createObject(Simulation primaryIdentifer)

createModule

public TopLevelType createModule(Simulation simulation)

Specified by:

createModule in interface ModuleBuilder

getBuilder

protected abstract BuilderType getBuilder()

getModule

public TopLevelType getModule()

Specified by:

getModule in interface ModuleBuilder

identifier

public BuilderType identifier(String identifier)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                CellTopology topology)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                double stoichiometricNumber)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                CellTopology topology,
                                double stoichiometricNumber)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                double stoichiometricNumber,
                                double reactionOrder)

addProduct

public BuilderType addProduct(ChemicalEntity chemicalEntity,
                              CellTopology topology)

addProduct

public BuilderType addProduct(ChemicalEntity chemicalEntity)

addProduct

public BuilderType addProduct(ChemicalEntity chemicalEntity,
                              double stoichiometricNumber)

setNonElementary

public BuilderType setNonElementary()

build

public TopLevelType build()

Specified by:

build in interface ModuleBuilder