bio.singa.simulation.model.modules.concentration.imlementations

Class DynamicReaction.DynamicReactionBuilder

java.lang.Object

bio.singa.simulation.model.modules.concentration.imlementations.DynamicReaction.DynamicReactionBuilder

All Implemented Interfaces:

DynamicReaction.BuildStep, DynamicReaction.KineticLawStep, DynamicReaction.ParameterStep, ModuleBuilder

Enclosing class:

DynamicReaction

public static class DynamicReaction.DynamicReactionBuilder
extends Object
implements DynamicReaction.KineticLawStep, DynamicReaction.ParameterStep, DynamicReaction.BuildStep, ModuleBuilder

Constructor Summary

Constructors

Constructor and Description
DynamicReactionBuilder(Simulation simulation)

Method Summary

Modifier and Type	Method and Description
DynamicReaction	build()
DynamicReaction	createModule(Simulation simulation)
DynamicReaction	getModule()
DynamicReaction.KineticLawStep	identifier(String identifier)
DynamicReaction.BuildStep	kineticLaw(KineticLaw kineticLaw)
DynamicReaction.ParameterStep	kineticLaw(String expression)
DynamicReaction.ParameterStep	referenceParameter(Parameter<?> reactant)
DynamicReaction.ParameterStep	referenceParameter(Reactant reactant)
DynamicReaction.ParameterStep	referenceParameter(ScalableQuantityFeature<?> scalableFeature)
DynamicReaction.ParameterStep	referenceParameter(String parameterIdentifier, double parameter)
DynamicReaction.ParameterStep	referenceParameter(String parameterIdentifier, double parameter, Evidence evidence)
DynamicReaction.ParameterStep	referenceParameter(String parameterIdentifier, Reactant reactant)
DynamicReaction.ParameterStep	referenceParameter(String parameterIdentifier, ScalableQuantityFeature<?> scalableFeature)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DynamicReactionBuilder

public DynamicReactionBuilder(Simulation simulation)

Method Detail

getModule

public DynamicReaction getModule()

Specified by:

getModule in interface ModuleBuilder

createModule

public DynamicReaction createModule(Simulation simulation)

Specified by:

createModule in interface ModuleBuilder

identifier

public DynamicReaction.KineticLawStep identifier(String identifier)

Specified by:

identifier in interface DynamicReaction.KineticLawStep

kineticLaw

public DynamicReaction.ParameterStep kineticLaw(String expression)

Specified by:

kineticLaw in interface DynamicReaction.KineticLawStep

kineticLaw

public DynamicReaction.BuildStep kineticLaw(KineticLaw kineticLaw)

Specified by:

kineticLaw in interface DynamicReaction.KineticLawStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(ScalableQuantityFeature<?> scalableFeature)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(String parameterIdentifier,
                                                        ScalableQuantityFeature<?> scalableFeature)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(Parameter<?> reactant)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(Reactant reactant)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(String parameterIdentifier,
                                                        Reactant reactant)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(String parameterIdentifier,
                                                        double parameter)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

referenceParameter

public DynamicReaction.ParameterStep referenceParameter(String parameterIdentifier,
                                                        double parameter,
                                                        Evidence evidence)

Specified by:

referenceParameter in interface DynamicReaction.ParameterStep

build

public DynamicReaction build()

Specified by:

build in interface DynamicReaction.BuildStep

Specified by:

build in interface DynamicReaction.ParameterStep

Specified by:

build in interface ModuleBuilder