Uses of Interface
bio.singa.simulation.model.modules.UpdateModule

Packages that use UpdateModule

Package	Description
bio.singa.simulation.features.variation
bio.singa.simulation.model.agents.pointlike
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.concentration
bio.singa.simulation.model.modules.concentration.imlementations
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.modules.displacement.implementations
bio.singa.simulation.model.modules.qualitative
bio.singa.simulation.model.modules.qualitative.implementations
bio.singa.simulation.model.simulation

Uses of UpdateModule in bio.singa.simulation.features.variation

Methods in bio.singa.simulation.features.variation that return UpdateModule

Modifier and Type	Method and Description
UpdateModule	ModuleFeatureVariationEntry.getModule()
UpdateModule	ModuleFeatureVariation.getModule()

Methods in bio.singa.simulation.features.variation with parameters of type UpdateModule

Modifier and Type	Method and Description
void	ModuleFeatureVariationEntry.setModule(UpdateModule module)

Constructors in bio.singa.simulation.features.variation with parameters of type UpdateModule

Constructor and Description
ModuleFeatureVariation(UpdateModule module, Class<? extends Feature<FeatureType>> featureClass)
ModuleFeatureVariationEntry(UpdateModule module, Feature<?> feature)

Uses of UpdateModule in bio.singa.simulation.model.agents.pointlike

Methods in bio.singa.simulation.model.agents.pointlike with parameters of type UpdateModule

Modifier and Type	Method and Description
void	Vesicle.clearPotentialDeltasBut(UpdateModule module)

Uses of UpdateModule in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs with parameters of type UpdateModule

Modifier and Type	Method and Description
void	AutomatonNode.clearPotentialDeltasBut(UpdateModule module)

Uses of UpdateModule in bio.singa.simulation.model.modules.concentration

Classes in bio.singa.simulation.model.modules.concentration that implement UpdateModule

Modifier and Type	Class and Description
class	ConcentrationBasedModule<DeltaFunctionType extends AbstractDeltaFunction> Concentration based modules handle updates that are applied to the concentrations in Updatables during a simulation.

Methods in bio.singa.simulation.model.modules.concentration that return UpdateModule

Modifier and Type	Method and Description
UpdateModule	ConcentrationDelta.getModule() Returns the module, that calculated this delta.

Methods in bio.singa.simulation.model.modules.concentration with parameters of type UpdateModule

Modifier and Type	Method and Description
void	ConcentrationDeltaManager.clearPotentialDeltasBut(UpdateModule module) Clears the list of potential deltas retaining updates from a specific module.

Constructors in bio.singa.simulation.model.modules.concentration with parameters of type UpdateModule

Constructor and Description
ConcentrationDelta(UpdateModule module, CellSubsection cellSubsection, ChemicalEntity chemicalEntity, javax.measure.Quantity<MolarConcentration> quantity) Creates a new concentration delta.

Uses of UpdateModule in bio.singa.simulation.model.modules.concentration.imlementations

Classes in bio.singa.simulation.model.modules.concentration.imlementations that implement UpdateModule

Modifier and Type	Class and Description
class	ComplexBuildingReaction Complex building or breaking reactions are a special kind of ReversibleReaction.
class	Diffusion Diffusion is the fundamental force governing the random movement of molecules in cells.
class	DynamicReaction
class	MembraneDiffusion The membrane diffusion module describes the movement of chemical entities across Membranes driven by the MembranePermeability of the cargo.
class	MichaelisMentenReaction
class	NthOrderReaction
class	Reaction Reactions in general are ConcentrationBasedModules following the laws of chemical kinetics.
class	ReversibleReaction Reversible reactions are Reactions where the substrates form products, and products can also from substrates.
class	SingleFileChannelMembraneTransport The single file channel transport describes the movement of cargo molecules through Transporter proteins, so called membrane channels.

Uses of UpdateModule in bio.singa.simulation.model.modules.displacement

Classes in bio.singa.simulation.model.modules.displacement that implement UpdateModule

Modifier and Type	Class and Description
class	DisplacementBasedModule

Uses of UpdateModule in bio.singa.simulation.model.modules.displacement.implementations

Classes in bio.singa.simulation.model.modules.displacement.implementations that implement UpdateModule

Modifier and Type	Class and Description
class	EndocytosisActinBoost
class	VesicleConfinedDiffusion
class	VesicleCytoplasmDiffusion
class	VesicleTransport

Uses of UpdateModule in bio.singa.simulation.model.modules.qualitative

Classes in bio.singa.simulation.model.modules.qualitative that implement UpdateModule

Modifier and Type	Class and Description
class	QualitativeModule

Uses of UpdateModule in bio.singa.simulation.model.modules.qualitative.implementations

Classes in bio.singa.simulation.model.modules.qualitative.implementations that implement UpdateModule

Modifier and Type	Class and Description
class	ActinCortexAttachment
class	ActinCortexDiffusivityScaling
class	ClathrinMediatedEndocytosis
class	LineLikeAgentAttachment
class	VesicleFusion

Uses of UpdateModule in bio.singa.simulation.model.simulation

Methods in bio.singa.simulation.model.simulation that return types with arguments of type UpdateModule

Modifier and Type	Method and Description
List<UpdateModule>	Simulation.getModules()

Methods in bio.singa.simulation.model.simulation with parameters of type UpdateModule

Modifier and Type	Method and Description
void	Updatable.clearPotentialDeltasBut(UpdateModule module)