Package bio.singa.simulation Description
The simulations allows for the definition of models and simulations based on modules, that define cellular processes.
A spatial component can be defined using a graph like structure spanned over the simulation space. Each node of the
graph is responsible for the simulation of a subsection of the simulation space. Modules for reactions, different
types of diffusion, and transport processes are available. The SimulationManager can be used to conveniently write
trajectories of the simulation, define termination conditions.
The next major update will bring major improvements and refactorings to this package.
- Author:
- cl