Uses of Class
bio.singa.simulation.model.sections.CellRegion

Packages that use CellRegion

Package	Description
bio.singa.simulation.model.agents.membranes
bio.singa.simulation.model.agents.organelles
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.sections
bio.singa.simulation.model.simulation

Uses of CellRegion in bio.singa.simulation.model.agents.membranes

Methods in bio.singa.simulation.model.agents.membranes that return CellRegion

Modifier and Type	Method and Description
CellRegion	Membrane.getRepresentativeRegion()

Constructors in bio.singa.simulation.model.agents.membranes with parameters of type CellRegion

Constructor and Description
Membrane(String identifier, CellRegion representativeRegion)

Uses of CellRegion in bio.singa.simulation.model.agents.organelles

Methods in bio.singa.simulation.model.agents.organelles that return CellRegion

Modifier and Type	Method and Description
CellRegion	Organelle.getInternalRegion()
CellRegion	OrganelleTypes.getInternalRegion()
CellRegion	Organelle.getMembraneRegion()
CellRegion	OrganelleTypes.getMembraneRegion()

Constructors in bio.singa.simulation.model.agents.organelles with parameters of type CellRegion

Constructor and Description
Organelle(CellRegion internalRegion, CellRegion membraneRegion, Polygon polygon, javax.measure.Quantity<javax.measure.quantity.Length> scale)

Uses of CellRegion in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs that return CellRegion

Modifier and Type	Method and Description
CellRegion	AutomatonNode.getCellRegion()
CellRegion	AutomatonGraph.getCellRegion(String identifier) Return the cell section with the given identifier.
static CellRegion	AutomatonGraphs.splitRectangularGraphWithMembrane(AutomatonGraph graph, CellSubsection innerSection, CellSubsection outerSection, boolean switchSides)

Methods in bio.singa.simulation.model.graphs that return types with arguments of type CellRegion

Modifier and Type	Method and Description
Set<CellRegion>	AutomatonGraph.getCellSections() Returns all CellSubsections referenced in this graph.

Methods in bio.singa.simulation.model.graphs with parameters of type CellRegion

Modifier and Type	Method and Description
void	AutomatonGraph.addCellRegion(CellRegion cellSection) Adds a cell section to this graph but does not associate any node to it.
static Set<AutomatonNode>	AutomatonGraphs.circleRegion(AutomatonGraph graph, CellRegion membraneRegion, RectangularCoordinate centre, int radius)
static void	AutomatonGraphs.fillRegion(AutomatonGraph graph, CellRegion innerRegion, RectangularCoordinate centre, int radius)
void	AutomatonNode.setCellRegion(CellRegion cellRegion)

Uses of CellRegion in bio.singa.simulation.model.modules.displacement

Methods in bio.singa.simulation.model.modules.displacement that return CellRegion

Modifier and Type	Method and Description
CellRegion	Vesicle.getCellRegion()

Uses of CellRegion in bio.singa.simulation.model.sections

Fields in bio.singa.simulation.model.sections declared as CellRegion

Modifier and Type	Field and Description
static CellRegion	CellRegion.CYTOSOL_A
static CellRegion	CellRegion.CYTOSOL_B
static CellRegion	CellRegions.EXTRACELLULAR_REGION
static CellRegion	CellRegion.MEMBRANE

Methods in bio.singa.simulation.model.sections that return CellRegion

Modifier and Type	Method and Description
static CellRegion	CellRegion.forVesicle(String identifier)

Methods in bio.singa.simulation.model.sections with parameters of type CellRegion

Modifier and Type	Method and Description
static javafx.scene.paint.Color	CellSubsections.getColor(CellRegion cellRegion)

Uses of CellRegion in bio.singa.simulation.model.simulation

Methods in bio.singa.simulation.model.simulation that return CellRegion

Modifier and Type	Method and Description
CellRegion	Updatable.getCellRegion()