bio.singa.simulation.model.sections

Class ConcentrationPool

java.lang.Object

bio.singa.simulation.model.sections.ConcentrationPool

public class ConcentrationPool
extends Object

The concentration pool manages the MolarConcentration of ChemicalEntitys in CellSubsections.

Author:

cl

Constructor Summary

Constructors

Constructor and Description
ConcentrationPool() Creates a new, empty concentration pool.

Method Summary

Modifier and Type	Method and Description
ConcentrationPool	fullCopy() Creates a copy of this concentration pool.
javax.measure.Quantity<MolarConcentration>	get(ChemicalEntity entity) Returns the concentration of a entity.
Set<Map.Entry<ChemicalEntity,javax.measure.Quantity<MolarConcentration>>>	getConcentrations()
Set<ChemicalEntity>	getReferencedEntities() Returns all entities referenced in this map.
void	set(ChemicalEntity entity, javax.measure.Quantity<MolarConcentration> concentration) Sets the concentration of a entity.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ConcentrationPool

public ConcentrationPool()

Creates a new, empty concentration pool.

Method Detail

getReferencedEntities

public Set<ChemicalEntity> getReferencedEntities()

Returns all entities referenced in this map.

Returns:

All entities referenced in this map.

getConcentrations

public Set<Map.Entry<ChemicalEntity,javax.measure.Quantity<MolarConcentration>>> getConcentrations()

get

public javax.measure.Quantity<MolarConcentration> get(ChemicalEntity entity)

Returns the concentration of a entity.

Parameters:

entity - The entity.

Returns:

The concentration of a entity.

set

public void set(ChemicalEntity entity,
                javax.measure.Quantity<MolarConcentration> concentration)

Sets the concentration of a entity.

Parameters:

entity - Th entity.

concentration - The concentration (this should be scaled to the subsection volume).

fullCopy

public ConcentrationPool fullCopy()

Creates a copy of this concentration pool.

Returns:

The concentration pool.