bio.singa.simulation.model.modules.qualitative.implementations

Class VesicleFusion

java.lang.Object

bio.singa.simulation.model.modules.qualitative.QualitativeModule

bio.singa.simulation.model.modules.qualitative.implementations.VesicleFusion

All Implemented Interfaces:

UpdateModule

public class VesicleFusion
extends QualitativeModule

Author:

cl

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
VesicleFusion()

Method Summary

Modifier and Type	Method and Description
void	addMatchingQSnare(ChemicalEntity entity)
void	addMatchingRSnare(ChemicalEntity entity)
void	calculateUpdates()
int	getMinimalPairs()
Map<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>>	getTetheredVesicles()
void	initializeComplexes()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()
void	setMinimalPairs(int minimalPairs)

Methods inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

checkFeatures, getFeature, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getState, getStringForProtocol, resetState, scaleScalableFeatures, setFeature, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VesicleFusion

public VesicleFusion()

Method Detail

addMatchingRSnare

public void addMatchingRSnare(ChemicalEntity entity)

addMatchingQSnare

public void addMatchingQSnare(ChemicalEntity entity)

getMinimalPairs

public int getMinimalPairs()

setMinimalPairs

public void setMinimalPairs(int minimalPairs)

getTetheredVesicles

public Map<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>> getTetheredVesicles()

initializeComplexes

public void initializeComplexes()

calculateUpdates

public void calculateUpdates()

optimizeTimeStep

public void optimizeTimeStep()

onReset

public void onReset()

onCompletion

public void onCompletion()