bio.singa.simulation.model.modules.qualitative.implementations

Class ClathrinMediatedEndocytosis

java.lang.Object

bio.singa.simulation.model.modules.qualitative.QualitativeModule

bio.singa.simulation.model.modules.qualitative.implementations.ClathrinMediatedEndocytosis

All Implemented Interfaces:

UpdateModule

public class ClathrinMediatedEndocytosis
extends QualitativeModule

Author:

cl

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
ClathrinMediatedEndocytosis()

Method Summary

Modifier and Type	Method and Description
void	addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea, double numberOfEntities, ChemicalEntity chemicalEntity)
void	addMembraneSegment(MembraneSegment segment)
void	calculateUpdates()
protected void	evaluateModuleState()
HashMap<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>>	getMaturingVesicles()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()
String	toString()

Methods inherited from class bio.singa.simulation.model.modules.qualitative.QualitativeModule

checkFeatures, getFeature, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getState, getStringForProtocol, resetState, scaleScalableFeatures, setFeature, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ClathrinMediatedEndocytosis

public ClathrinMediatedEndocytosis()

Method Detail

calculateUpdates

public void calculateUpdates()

addMembraneCargo

public void addMembraneCargo(javax.measure.Quantity<javax.measure.quantity.Area> referenceArea,
                             double numberOfEntities,
                             ChemicalEntity chemicalEntity)

evaluateModuleState

protected void evaluateModuleState()

optimizeTimeStep

public void optimizeTimeStep()

onReset

public void onReset()

onCompletion

public void onCompletion()

addMembraneSegment

public void addMembraneSegment(MembraneSegment segment)

getMaturingVesicles

public HashMap<Vesicle,javax.measure.Quantity<javax.measure.quantity.Time>> getMaturingVesicles()

toString

public String toString()

Overrides:

toString in class Object