bio.singa.simulation.model.modules.displacement.implementations

Class VesicleDiffusion

java.lang.Object

bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

bio.singa.simulation.model.modules.displacement.implementations.VesicleDiffusion

All Implemented Interfaces:

UpdateModule

public class VesicleDiffusion
extends DisplacementBasedModule

Author:

cl

Field Summary

Fields inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

simulation, state, updateScheduler

Constructor Summary

Constructors

Constructor and Description
VesicleDiffusion()

Method Summary

Modifier and Type	Method and Description
DisplacementDelta	calculateDisplacement(Vesicle vesicle)
void	calculateUpdates()
String	toString()
void	useEinsteinStrokesDiffusivity()
void	useLiteratureDiffusivity()

Methods inherited from class bio.singa.simulation.model.modules.displacement.DisplacementBasedModule

addDeltaFunction, checkFeatures, determineDeltas, evaluateModuleState, getFeature, getFeatures, getIdentifier, getReferencedEntities, getRequiredFeatures, getScaledFeature, getScaledFeature, getState, getStringForProtocol, listFeatures, onCompletion, onReset, optimizeTimeStep, processAllVesicles, resetState, scaleScalableFeatures, setFeature, setSimulation

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VesicleDiffusion

public VesicleDiffusion()

Method Detail

calculateUpdates

public void calculateUpdates()

Specified by:

calculateUpdates in interface UpdateModule

Overrides:

calculateUpdates in class DisplacementBasedModule

useEinsteinStrokesDiffusivity

public void useEinsteinStrokesDiffusivity()

useLiteratureDiffusivity

public void useLiteratureDiffusivity()

calculateDisplacement

public DisplacementDelta calculateDisplacement(Vesicle vesicle)

toString

public String toString()

Overrides:

toString in class Object