bio.singa.simulation.model.modules.concentration.imlementations

Class Reaction.Builder<TopLevelType extends Reaction,BuilderType extends Reaction.Builder>

java.lang.Object

bio.singa.simulation.model.modules.concentration.imlementations.Reaction.Builder<TopLevelType,BuilderType>

Direct Known Subclasses:

MichaelisMentenReaction.Builder, NthOrderReaction.Builder, ReversibleReaction.Builder

Enclosing class:

Reaction

public abstract static class Reaction.Builder<TopLevelType extends Reaction,BuilderType extends Reaction.Builder>
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
protected BuilderType	builderObject
protected TopLevelType	topLevelObject

Constructor Summary

Constructors

Constructor and Description
Builder(Simulation simulation)

Method Summary

Modifier and Type	Method and Description
BuilderType	addProduct(ChemicalEntity chemicalEntity)
BuilderType	addProduct(ChemicalEntity chemicalEntity, double stoichiometricNumber)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, double stoichiometricNumber)
BuilderType	addSubstrate(ChemicalEntity chemicalEntity, double stoichiometricNumber, double reactionOrder)
TopLevelType	build()
protected abstract TopLevelType	createObject(Simulation primaryIdentifer)
protected abstract BuilderType	getBuilder()
BuilderType	identifier(String identifier)
BuilderType	setNonElementary()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

topLevelObject

protected final TopLevelType extends Reaction topLevelObject

builderObject

protected final BuilderType extends Reaction.Builder builderObject

Constructor Detail

Builder

public Builder(Simulation simulation)

Method Detail

createObject

protected abstract TopLevelType createObject(Simulation primaryIdentifer)

getBuilder

protected abstract BuilderType getBuilder()

identifier

public BuilderType identifier(String identifier)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                double stoichiometricNumber)

addSubstrate

public BuilderType addSubstrate(ChemicalEntity chemicalEntity,
                                double stoichiometricNumber,
                                double reactionOrder)

addProduct

public BuilderType addProduct(ChemicalEntity chemicalEntity)

addProduct

public BuilderType addProduct(ChemicalEntity chemicalEntity,
                              double stoichiometricNumber)

setNonElementary

public BuilderType setNonElementary()

build

public TopLevelType build()