bio.singa.simulation.model.modules.concentration.imlementations

Class ComplexBuildingReaction.BindingBuilder

java.lang.Object

bio.singa.simulation.model.modules.concentration.imlementations.ComplexBuildingReaction.BindingBuilder

All Implemented Interfaces:

ComplexBuildingReaction.BindeeSectionSelection, ComplexBuildingReaction.BindeeSelection, ComplexBuildingReaction.BinderSectionSelection, ComplexBuildingReaction.BinderSelection, ComplexBuildingReaction.BuilderStep

Enclosing class:

ComplexBuildingReaction

public static class ComplexBuildingReaction.BindingBuilder
extends Object
implements ComplexBuildingReaction.BinderSelection, ComplexBuildingReaction.BinderSectionSelection, ComplexBuildingReaction.BindeeSelection, ComplexBuildingReaction.BindeeSectionSelection, ComplexBuildingReaction.BuilderStep

Constructor Summary

Constructors

Constructor and Description
BindingBuilder(Simulation simulation)

Method Summary

Modifier and Type	Method and Description
ComplexBuildingReaction	build()
ComplexBuildingReaction.BinderSectionSelection	by(ChemicalEntity binder)
ComplexBuildingReaction.BinderSectionSelection	by(ChemicalEntity binder, RateConstant backwardsRateConstant)
ComplexBuildingReaction.BuilderStep	formingComplex(ComplexedChemicalEntity complex)
ComplexBuildingReaction.BindeeSelection	identifier(String identifier)
ComplexBuildingReaction.BinderSelection	in(CellTopology binderTopology)
ComplexBuildingReaction.BindeeSectionSelection	of(ChemicalEntity bindee)
ComplexBuildingReaction.BindeeSectionSelection	of(ChemicalEntity binder, RateConstant forwardsRateConstant)
ComplexBuildingReaction.BuilderStep	to(CellTopology binderTopology)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BindingBuilder

public BindingBuilder(Simulation simulation)

Method Detail

identifier

public ComplexBuildingReaction.BindeeSelection identifier(String identifier)

Specified by:

identifier in interface ComplexBuildingReaction.BindeeSelection

of

public ComplexBuildingReaction.BindeeSectionSelection of(ChemicalEntity bindee)

Specified by:

of in interface ComplexBuildingReaction.BindeeSelection

of

public ComplexBuildingReaction.BindeeSectionSelection of(ChemicalEntity binder,
                                                         RateConstant forwardsRateConstant)

Specified by:

of in interface ComplexBuildingReaction.BindeeSelection

in

public ComplexBuildingReaction.BinderSelection in(CellTopology binderTopology)

Specified by:

in in interface ComplexBuildingReaction.BindeeSectionSelection

by

public ComplexBuildingReaction.BinderSectionSelection by(ChemicalEntity binder)

Specified by:

by in interface ComplexBuildingReaction.BinderSelection

by

public ComplexBuildingReaction.BinderSectionSelection by(ChemicalEntity binder,
                                                         RateConstant backwardsRateConstant)

Specified by:

by in interface ComplexBuildingReaction.BinderSelection

to

public ComplexBuildingReaction.BuilderStep to(CellTopology binderTopology)

Specified by:

to in interface ComplexBuildingReaction.BinderSectionSelection

formingComplex

public ComplexBuildingReaction.BuilderStep formingComplex(ComplexedChemicalEntity complex)

Specified by:

formingComplex in interface ComplexBuildingReaction.BuilderStep

build

public ComplexBuildingReaction build()

Specified by:

build in interface ComplexBuildingReaction.BuilderStep