Uses of Class
bio.singa.simulation.model.modules.concentration.ConcentrationDelta

Packages that use ConcentrationDelta

Package	Description
bio.singa.simulation.model.graphs
bio.singa.simulation.model.modules.concentration
bio.singa.simulation.model.modules.concentration.functions
bio.singa.simulation.model.modules.concentration.imlementations
bio.singa.simulation.model.modules.displacement
bio.singa.simulation.model.simulation

Uses of ConcentrationDelta in bio.singa.simulation.model.graphs

Methods in bio.singa.simulation.model.graphs that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
List<ConcentrationDelta>	AutomatonNode.getPotentialSpatialDeltas()

Methods in bio.singa.simulation.model.graphs with parameters of type ConcentrationDelta

Modifier and Type	Method and Description
void	AutomatonNode.addPotentialDelta(ConcentrationDelta potentialDelta) Adds a potential delta to this node.

Uses of ConcentrationDelta in bio.singa.simulation.model.modules.concentration

Methods in bio.singa.simulation.model.modules.concentration that return ConcentrationDelta

Modifier and Type	Method and Description
ConcentrationDelta	ConcentrationDelta.multiply(double multiplicand) Multiplies (modifies) this delta with the given multiplicand.

Methods in bio.singa.simulation.model.modules.concentration that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
Map<ConcentrationDeltaIdentifier,ConcentrationDelta>	FieldSupplier.getCurrentFullDeltas() Returns all currently available full deltas.
Map<ConcentrationDeltaIdentifier,ConcentrationDelta>	FieldSupplier.getCurrentHalfDeltas() Returns all currently available half deltas.
List<ConcentrationDelta>	ConcentrationDeltaManager.getFinalDeltas() Returns all deltas that are going to be applied to this node.
List<ConcentrationDelta>	ConcentrationDeltaManager.getPotentialDeltas() Returns all potential deltas that should be applied.

Methods in bio.singa.simulation.model.modules.concentration with parameters of type ConcentrationDelta

Modifier and Type	Method and Description
void	ConcentrationDeltaManager.addPotentialDelta(ConcentrationDelta potentialDelta) Adds a potential delta to this updatable.
boolean	ConcentrationBasedModule.deltaIsValid(ConcentrationDelta delta) Returns true if the delta is valid, i.e.
void	ConcentrationBasedModule.handleDelta(ConcentrationDeltaIdentifier deltaIdentifier, ConcentrationDelta delta) Handles a delta based on the current state of the calculation.

Uses of ConcentrationDelta in bio.singa.simulation.model.modules.concentration.functions

Methods in bio.singa.simulation.model.modules.concentration.functions that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
Function<ConcentrationContainer,List<ConcentrationDelta>>	SectionDeltaFunction.getFunction() Returns the function.
Function<ConcentrationContainer,ConcentrationDelta>	EntityDeltaFunction.getFunction() Returns the function.
Function<ConcentrationContainer,Map<ConcentrationDeltaIdentifier,ConcentrationDelta>>	UpdatableDeltaFunction.getFunction() Returns the function.

Constructor parameters in bio.singa.simulation.model.modules.concentration.functions with type arguments of type ConcentrationDelta

Constructor and Description
EntityDeltaFunction(Function<ConcentrationContainer,ConcentrationDelta> function, Predicate<ConcentrationContainer> condition) Creates a new entity delta function with the specified condition and function.
SectionDeltaFunction(Function<ConcentrationContainer,List<ConcentrationDelta>> function, Predicate<ConcentrationContainer> condition) Creates a new section delta function with the specified condition and function.
UpdatableDeltaFunction(Function<ConcentrationContainer,Map<ConcentrationDeltaIdentifier,ConcentrationDelta>> function, Predicate<ConcentrationContainer> condition) Creates a new updatable delta function with the specified condition and function.

Uses of ConcentrationDelta in bio.singa.simulation.model.modules.concentration.imlementations

Methods in bio.singa.simulation.model.modules.concentration.imlementations that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
protected List<ConcentrationDelta>	Reaction.calculateDeltas(ConcentrationContainer concentrationContainer) Calculates all deltas for all reactants for the reaction.

Uses of ConcentrationDelta in bio.singa.simulation.model.modules.displacement

Methods in bio.singa.simulation.model.modules.displacement that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
List<ConcentrationDelta>	Vesicle.getPotentialSpatialDeltas()

Methods in bio.singa.simulation.model.modules.displacement with parameters of type ConcentrationDelta

Modifier and Type	Method and Description
void	Vesicle.addPotentialDelta(ConcentrationDelta delta)

Uses of ConcentrationDelta in bio.singa.simulation.model.simulation

Methods in bio.singa.simulation.model.simulation that return types with arguments of type ConcentrationDelta

Modifier and Type	Method and Description
List<ConcentrationDelta>	Updatable.getPotentialSpatialDeltas()

Methods in bio.singa.simulation.model.simulation with parameters of type ConcentrationDelta

Modifier and Type	Method and Description
void	Updatable.addPotentialDelta(ConcentrationDelta delta)