bio.singa.simulation.model.modules

Interface UpdateModule

All Known Implementing Classes:

ClathrinMediatedEndocytosis, ClathrinMediatedEndocytosis, ComplexBuildingReaction, ConcentrationBasedModule, Diffusion, DisplacementBasedModule, DynamicReaction, EndocytosisActinBoost, MembraneDiffusion, MichaelisMentenReaction, NthOrderReaction, QualitativeModule, Reaction, ReversibleReaction, SingleFileChannelMembraneTransport, VesicleAttachment, VesicleDiffusion, VesicleFusion, VesicleTransport

public interface UpdateModule

Author:

cl

Method Summary

Modifier and Type	Method and Description
void	calculateUpdates()
void	checkFeatures()
String	getIdentifier()
Set<ChemicalEntity>	getReferencedEntities()
Set<Class<? extends Feature>>	getRequiredFeatures()
<FeatureContentType extends javax.measure.Quantity<FeatureContentType>> javax.measure.Quantity<FeatureContentType>	getScaledFeature(Class<? extends ScalableFeature<FeatureContentType>> featureClass)
ModuleState	getState()
String	getStringForProtocol()
void	onCompletion()
void	onReset()
void	optimizeTimeStep()
void	resetState()
void	scaleScalableFeatures()

Method Detail

calculateUpdates

void calculateUpdates()

getState

ModuleState getState()

resetState

void resetState()

scaleScalableFeatures

void scaleScalableFeatures()

getRequiredFeatures

Set<Class<? extends Feature>> getRequiredFeatures()

getScaledFeature

<FeatureContentType extends javax.measure.Quantity<FeatureContentType>> javax.measure.Quantity<FeatureContentType> getScaledFeature(Class<? extends ScalableFeature<FeatureContentType>> featureClass)

optimizeTimeStep

void optimizeTimeStep()

getReferencedEntities

Set<ChemicalEntity> getReferencedEntities()

checkFeatures

void checkFeatures()

getIdentifier

String getIdentifier()

getStringForProtocol

String getStringForProtocol()

onReset

void onReset()

onCompletion

void onCompletion()